Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1274 ATGGGTATCTCTCGTGATTCCATGCACAAAAGGCGTGCCACCGGAGGCAAGAAGAAGGCTTGGAGAAAGAAGAGAAAGTATGAACTTGGGAGGCAACCAGCAAACACAAAGCTATCAAGCAACAAAACTGTGAGGAGGGTTAGGGTTCGAGGTGGGAATGTTAAGTGGCGTGCTTTGAGGCTTGATACTGGGAATTACTCATGGGGCAGTGAAGCTGTGACTCGCAAAACTAGAATTCTTGATGTGGTGTACAATGCTTCTAACAATGAGCTGGTACGTACTCAGACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGCGTTGACATCGGTCGCAAGAAGAAGAGTGCAACTTCTGCCAAGAAGGAAGGGGAGGATGGTGAAACTGCAACGGAGGAAGTGAAAAAGAGCAAACATGTATTGAGAAAGCTAGAGAAACGTCAACAGGACCGGAAGCTGGATCCTCATATTGAAGAACAATTTGGAGGTGGTCGTCTATTGGCCTGCATTGCCTCTCGTCCTGGTCAATGTGGTCGCGCTGATGGATATATTTTGGAGGGCAAAGAGCTAGAATTTTACATGAAGAAGATCCAAAGGAAGAAGGGCAAGGGAGCAGGGGCTGCCTAA 663 0.4706 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSATSAKKEGEDGETATEEVKKSKHVLRKLEKRQQDRKLDPHIEEQFGGGRLLACIASRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1274 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere05g1274 220 MobiDBLite consensus disorder prediction 1 42 - -
Dere05g1274 220 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Dere05g1274 220 MobiDBLite consensus disorder prediction 125 148 - -
Dere05g1274 220 FunFam 40S ribosomal protein S8 109 176 - -
Dere05g1274 220 MobiDBLite consensus disorder prediction 11 26 - -
Dere05g1274 220 CDD Ribosomal_S8e_like 5 197 - -
Dere05g1274 220 Gene3D - 27 213 - -
Dere05g1274 220 FunFam 40S ribosomal protein S8 162 215 - -
Dere05g1274 220 FunFam 40S ribosomal protein S8 32 161 - -
Dere05g1274 220 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere05g1274 220 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Dere05g1274 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1274 Dere-ChrDere05 20743623 20745660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1274 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.000 1.08e-127 357