Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1271 ATGGTAAATTCCTCTCTGGCAGAACAGATGGAATCAGATCTCGGTAAGCTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTTGGGAATTATGGAGAGGTGATAGAGGCCGTTATCATGAGAGATCGCACAACAGGCCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTACTGTTGCCGAACGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCCGGGACGATCAACACACCATGAATAGAAATTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATTACTGAAAGTGATTTTAAGAAGTACTTTGATCAGTTTGGTACTATTACTGATGTTGTAGTTATGTATGATCACAATACCCAGAGGCCGAGAGGCTTTGGCTTCATCACTTTTGACTCTGAAGAAGCTGTGGACAGAGTTCTGTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCAGCCGGACCCCATTCATAGGATACAACTATGGTTTAAATAGGGCCAGTAGCTACCTAAACAATTATGCTCAGGGTTATAATATGAGTCCGATTGGAGGTTATAGATTGAGGATGGATGGTAGATTTAGTCCTGTTGCTAGTGGTAGAAGCGGGTTTTCCCCATATGCCACCAGTGGTTATGGAATGGGAGTAAATGTGGATGCAGGATTGAACCCAAGCTTTGGTGGGACTTCCAATTATGGGAGCAGTTTAGGATATGGTCGGATATTTAGTCCTTTCTATAGTGGCAACTCAAGCAGATTCACGACTCCTATTGGGTATACTGGGGGTAATGGGAGAAGCGATTCTGTTATGAACTCAACTTCTCGGAGTGTCTGGGGAAATGGAGGTCTGAATCAAGCCAATAACCCAGTCAACCCTGGCACTTACTTTGGATCTGGAGGTGGGGCTTTTGGTGTTTCAGTTGGAAACAGTGGCACAAATTGGGGCCAATCCAATGCAGCCCAGGGAGGAGGGCTTGGTTCTGGCTATGCAACTGGAAGTAATGTTTATGAAGGCAGAGACAGCAGCTTTGGGCCAGGAGGGGGAGGGTATGGAAGACATAGCAGTACAGGTGTAACTCCATCCTCTTCATTTACTGCATCAATTGGTGGTTATGAAGGATCCTATGGGGACTTATACCGCAGTGGTTCAGTATACAATGACTCAACTTGGCGGACTGCTACTTCTGACCTAGATGGTTCTGGCTCATTTGGTTATGGGCTTGATGGTCTAGCTTCAGAGGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGCTACAAGTAGACAGCCTACTAGAGGAATCGCTGCTTAG 1461 0.449 MVNSSLAEQMESDLGKLFIGGISWDTDEERLKEYFGNYGEVIEAVIMRDRTTGRARGFGFVVFADPTVAERVIMDKHIIDGRTVEAKKAVPRDDQHTMNRNSGSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRTPFIGYNYGLNRASSYLNNYAQGYNMSPIGGYRLRMDGRFSPVASGRSGFSPYATSGYGMGVNVDAGLNPSFGGTSNYGSSLGYGRIFSPFYSGNSSRFTTPIGYTGGNGRSDSVMNSTSRSVWGNGGLNQANNPVNPGTYFGSGGGAFGVSVGNSGTNWGQSNAAQGGGLGSGYATGSNVYEGRDSSFGPGGGGYGRHSSTGVTPSSSFTASIGGYEGSYGDLYRSGSVYNDSTWRTATSDLDGSGSFGYGLDGLASEDPVKNSEGYIGNYNATSRQPTRGIAA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1271 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 175 IPR000504 GO:0003723
Dere05g1271 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 84 IPR000504 GO:0003723
Dere05g1271 486 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Dere05g1271 486 Gene3D - 15 97 IPR012677 -
Dere05g1271 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Dere05g1271 486 CDD RRM2_Hrp1p 116 193 - -
Dere05g1271 486 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Dere05g1271 486 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 480 - -
Dere05g1271 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Dere05g1271 486 MobiDBLite consensus disorder prediction 87 114 - -
Dere05g1271 486 SUPERFAMILY RNA-binding domain, RBD 97 201 IPR035979 GO:0003676
Dere05g1271 486 SUPERFAMILY RNA-binding domain, RBD 5 113 IPR035979 GO:0003676
Dere05g1271 486 Gene3D - 114 194 IPR012677 -
Dere05g1271 486 SMART rrm1_1 16 87 IPR000504 GO:0003723
Dere05g1271 486 SMART rrm1_1 116 188 IPR000504 GO:0003723
Dere05g1271 486 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1271 Dere-ChrDere05 20650164 20653324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1271 14 189 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 1.59e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1271 05 20650164 20653324 Dere05g1271 05 20650164 20653324 ECH