Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1270 ATGCAGATAAGCCTGGTTTGCCTTGTTCTCCTTCCTTTCTTTTTCCCGGTTTGTGCAGGAGGTGAGTTCTCAGAATCCGAGTCTTTCTTCAGTTTCATCAGAGCCATTGATCCCCAAAATGTACTTAACATAAGCAAAATTTCAAATCCCTGCATGCTTAAGCTCAATGATATCATAAGATGCAACTCAAATGCTACTAATATTATAGGAATAAGGCTCCGAAACATGAACCTCAGTGGCATAATCGATGCAGATTCCTTATGTAGGCTGCGAAAGCTGAGAAGCGTCAACTTAGCTAAGAATTACATCAGAGGAAACATTCCTAATTCAATCTTGCACTGCACAAGGTTGGTGTATTTAAATCTAAGCAGCAATCAGTTGAGCGGAAGGGTACCTAAAGCCTTAACAAAATTGAGAAATCTTAGAAACTTGGACATCTCTAACAATTATTTTTCTGGCATCATACAAAGCCAACGTGAATTTAAGCATCTCTTTGCTCATTCCGAGGTTTCAAGATTATCAGAGAGAAATATTACCAGAGAGTGGTTGAAGGTAGAGGATACAATACAATCTATGTCAGGATCAGATCCACCTAACAGTGAACATATCAGTCCCAAAAAGCCATGGTATAAGGATTTAAAAACCTTGATACCGACAATTGTTGGTGTTGGATTGTTAATGTTATCCATGTACTTTGCGGTAAAGAAGGCACCTAAGTTGAAAGAAGAATGGGATGCGTTAGGAACCCATCAGGAGTCATCGCCAAAAATGCCGAAACCAGAGGATACAGAAGAGGTTAAGCTGAAGAAAAGAGATACAGAGCTTGTGTTCTTTATTGAAGAGCATGAAAGGTTCACACTGGAAGACCTACTACAGGCCACAGCTGACCTGAGAAATGAAAGCTTTTGCAGCAGCATGTACAAGGTAATACTGAAGAATAATATGCATTATGCAGTCAAAAGACTCAAGAATTTGCAGGTATCCTCTGATGAATTTGGGGAAACATTAAGGCAGATAAGTAACTTGATGCACCCCAATATTCTTCCCCTTGTTGGCTATCGTTCTACCAGTGAAGAAAAACTTATTATTTACAACTATCAAAGCAATGGGAGTCTGCTATGTCTTTTAAAGCAATATATGGAAGGCAAAAAAGAATTCCCATGGAGACTGCGACTGTCCATAGCAGCTGGAATTGCAAGGGGTTTGGGCTTCATATATCAGAAGTTGGAAGGCAGGGAGAGCATTCCTCATGGAAATCTCAAGCTGTCAAATATCCTTCTTAATCACAACAATGAACCTCTAATAAGTGAGTATGGAATATCAAAATTCTTAGATCCCAACAGAGCATTCCTCTTTGCCTCTCATGGATACACAGCTCCAGAAAAGACTTTGACAGAGAAGGGAGATGTTTATAGCTTCGGAGTGATTCTCCTGGAATTACTAACAGGAAAAAGCATAGAAATAAATAGCATAGACCTCCCCAGATGGGTCAGGTCCATGGTGAGAGAGGAATGGACAGGAGAGGTCTTTGACAAGGAAGTTAGAGCAACTGACTATCAGTGGGCATTTCCGGTGCTGAACATAGCCCTCATGTGTGTGTCGCGTGTCCCTGAAAATCGACCACCAATGGAAGAAGTTTTGGAGAAGATTGACGAAGTGATGAAGGAGTATGAGCATGTTCACCCGCAGGAGGAACATTTTGGTTCAACATGTTGTAACAACGTATCCAACCATGAAGATTGTTGTTCACTTCACAAGATCATACCTGAAACATGGGATTCTCCAGGATCAAATTACTGA 1800 0.4061 MQISLVCLVLLPFFFPVCAGGEFSESESFFSFIRAIDPQNVLNISKISNPCMLKLNDIIRCNSNATNIIGIRLRNMNLSGIIDADSLCRLRKLRSVNLAKNYIRGNIPNSILHCTRLVYLNLSSNQLSGRVPKALTKLRNLRNLDISNNYFSGIIQSQREFKHLFAHSEVSRLSERNITREWLKVEDTIQSMSGSDPPNSEHISPKKPWYKDLKTLIPTIVGVGLLMLSMYFAVKKAPKLKEEWDALGTHQESSPKMPKPEDTEEVKLKKRDTELVFFIEEHERFTLEDLLQATADLRNESFCSSMYKVILKNNMHYAVKRLKNLQVSSDEFGETLRQISNLMHPNILPLVGYRSTSEEKLIIYNYQSNGSLLCLLKQYMEGKKEFPWRLRLSIAAGIARGLGFIYQKLEGRESIPHGNLKLSNILLNHNNEPLISEYGISKFLDPNRAFLFASHGYTAPEKTLTEKGDVYSFGVILLELLTGKSIEINSIDLPRWVRSMVREEWTGEVFDKEVRATDYQWAFPVLNIALMCVSRVPENRPPMEEVLEKIDEVMKEYEHVHPQEEHFGSTCCNNVSNHEDCCSLHKIIPETWDSPGSNY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1270 599 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 555 IPR046959 -
Dere05g1270 599 Pfam Protein tyrosine and serine/threonine kinase 312 549 IPR001245 GO:0004672|GO:0006468
Dere05g1270 599 SUPERFAMILY L domain-like 59 164 - -
Dere05g1270 599 Gene3D Transferase(Phosphotransferase) domain 1 368 576 - -
Dere05g1270 599 SUPERFAMILY Protein kinase-like (PK-like) 304 548 IPR011009 -
Dere05g1270 599 Gene3D Ribonuclease Inhibitor 28 197 IPR032675 -
Dere05g1270 599 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 165 - -
Dere05g1270 599 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Dere05g1270 599 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
Dere05g1270 599 ProSiteProfiles Protein kinase domain profile. 291 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1270 Dere-ChrDere05 20607896 20610374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1270 6 556 Receptor kinase-like Gene Family AT5G53320 30.862 1.05e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere05g1270 PK_Tyr_Ser-Thr 1.8e-22 CL0016