Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1266 ATGGAGGCTGCTAACCACTCCGGTTCGGAGCTCCGGTTCCGGAATTCCGACGATGGGGCTTCCGATGATCCGAATCAACTCGGGTCACGGCAGAATTCGGACGCCGGAGCAACTGTGTCTGGCACTGGAGGCGCAAGGTACAAACTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCCTGTATTACAATACCGCCAGGGCTGAGTCCGACGTCGTTTCTGGAGTCCCCCGTGCTTTTGTCCAACATGAAGGTGGAGCCTTCGCCAACAACAGGGTCCCTTACTAAGAAGCCTCAAGCAGTGCTTCGTTCTCTTGCTTCTGCTACATTTCCTGTAACAAGTATATGCTCAAATACCAATACAATTGATGTCAGAAAATCTGGCTTCTTTGAGTTTAAACCACGCAGTAGTACAGATATGGTTCCCACAGATTTTAACAACCATGTAAGTGAACAGTCCATGCAAATGGATGGTCCAGGCCAAGCTCAAACGTATGCCTCATCAGCATTAGTTAAAAGTGAGATACCAGTGCTATCAAATGGATTAAGTCTTTCATCACCTGTTCAAATGGTTAGTTCAGGTGCCAGTGCTTCTGTTGAAGTTGATCTGGACAAACTTAACCAGAAAGGCAATGCAGCCACTGGGCTTCAAGCATCTCTAATTGAGGGTAGAGGCAGTGGCCTTTCAGTTGCAGCTGAGAGAACATCTGATGATGGATACAACTGGCGAAAATATGGCCAGAAACACGTTAAGGGAAGTGAATTTCCACGCAGCTATTACAAATGCACACACCCAAATTGCGAAGTAAAAAAATTATTTGAACGCTCTCATGATGGGCAAATAACTGAGATAATTTACAAGGGAAAACATGATCATCCTAAACCTCTACCAAGTCGCCGATATTCTACTGGTACTATGATGTCTGTGCAAGAAGAGAGAACTGACAAGGCTTTGTCAACCAACCAAGATGATAAAGCATCCAATATGTATGCTCAGGTGCCTCACACTGCCGATCCCAACAGTATCCCTGAGCAATCTACTGTACCTGCAAATGATGACAGTCCAGAGGGTGTTGGGTTAGTGTCAAATAGAATTATTGATGAGGTTGATGATGATGATCCCATCTCAAAGCGAAGCAAAATGGACATTGGAAATGCTGACATCACTCCTATAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACACTGAGTGAGGTTGACATATTAGATGATGGTTATCGCTGGCGTAAGTATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTGAGAAAACACGTGGAGAGGGCATCTCATGATCCCAAAGCAGTGATAACCACATACGAGGGTAAACACAACCATGATGTGCCTACTGCAAGGAGTAGTAGCCATGAGGCGGCAGGACAAACAGCTGCTGGTGGTGGGCAGACAAGAATTAGATCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGCATTAGCTCTGCTGCTGAACATAGATCAAACAGACAAGGGCAAATGCTGCTCTCTGAATTTGGGAACAGTCAAACTCACTCGAGCAATTCCAGTTTCAAATTTGTTCATACTACCCCTGCTCCGACATACTCCGGTGTTCTTAATAATGGCTCCAATCCATATGGTTCTAGAGAAAATCTGAGTGACGGTCCATCTTTAAACCATTCCTCTTATCCATGCCCAAACATGGGGAGAGTACTAACTGGTCCATGA 1779 0.4587 MEAANHSGSELRFRNSDDGASDDPNQLGSRQNSDAGATVSGTGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLTKKPQAVLRSLASATFPVTSICSNTNTIDVRKSGFFEFKPRSSTDMVPTDFNNHVSEQSMQMDGPGQAQTYASSALVKSEIPVLSNGLSLSSPVQMVSSGASASVEVDLDKLNQKGNAATGLQASLIEGRGSGLSVAAERTSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPLPSRRYSTGTMMSVQEERTDKALSTNQDDKASNMYAQVPHTADPNSIPEQSTVPANDDSPEGVGLVSNRIIDEVDDDDPISKRSKMDIGNADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHEAAGQTAAGGGQTRIRSEESDTISLDLGMGISSAAEHRSNRQGQMLLSEFGNSQTHSSNSSFKFVHTTPAPTYSGVLNNGSNPYGSRENLSDGPSLNHSSYPCPNMGRVLTGP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1266 592 ProSiteProfiles WRKY domain profile. 407 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 Pfam WRKY DNA -binding domain 413 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 FunFam WRKY transcription factor 228 297 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 552 583 - -
Dere05g1266 592 FunFam WRKY transcription factor 33 399 465 - -
Dere05g1266 592 SMART WRKY_cls 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 SMART WRKY_cls 412 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 SUPERFAMILY WRKY DNA-binding domain 234 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 511 IPR044810 GO:0003700
Dere05g1266 592 ProSiteProfiles WRKY domain profile. 232 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 MobiDBLite consensus disorder prediction 467 497 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 337 353 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 337 358 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 1 45 - -
Dere05g1266 592 SUPERFAMILY WRKY DNA-binding domain 404 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 MobiDBLite consensus disorder prediction 20 39 - -
Dere05g1266 592 Gene3D WRKY domain 397 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 Gene3D WRKY domain 229 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1266 592 MobiDBLite consensus disorder prediction 552 592 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 290 323 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 302 323 - -
Dere05g1266 592 MobiDBLite consensus disorder prediction 475 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1266 Dere-ChrDere05 20542945 20548667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1266 50 592 WRKY Transcription Factor Family AT4G26640 56.351 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere05g1266 WRKY 1.5e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1266 05 20542945 20548667 Dere05g1266 05 20542945 20548667 ECH