LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1264	ATGCAAACATCACAGAAACACGAACTTTGCTATGGCCCTCTGCAAAATCTGGAGTCATATTATTCTTCTTCAGTTCAAACCATAGAGCAATATTGCACCCTTGAATCTTCCTCAACAAGTAACAGTAACCCTGGCTTTAGTCCTCCATCGTCTAACGGTAGCCCAGTGTTAAAGCCACAACATTCTCTTGACTTGAGCGATGGCTCACCGGAGAGTGAATCTTGCTTGACACTAACACAAGACCTCGATGATCTCAGGCACAAGATAAGAGAGCTCGAGACTGCTATGCTGGGACCTGATGATGCAGATATATTAGACATAGAGAATGCTGGAGGATCTGATGCAGCCATGTCTGAGGCAGAGAAGTGGAAGAAGATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTATGTGCTTGTGCATATGCAATGGCAGGAAATGACATGGAGACAGCTGAATGGTTGATGTCAGAATTGAGAAAAATGGTGTCCGTTTCAGGAAACCCTATGCAACGATTGGGAGCATATATGTTGGAGGCTCTTGTGGCTAGATTGGCCTCTTCAGGAAGCACAATCTACAAAGGCTTGAAATGCAACGAACTTACTCCCACTGAACTCTTTTCTTATATGCAGATACTGTATGAAATCTGCCCATACTTCAAGTTTGGGTATTTGTCAGCAAATGGGGCAATCGCTGAGGCCATGAAGCAAGAGAATGAAGTCCATATAATTGATTTCCAGATGTATCAGGGAAGCCAGTGGGTGAGCCTAATCCGGGCTCTCGCCGGCCGCCCGGGAGGACCGCCCCAGATCAGAATAACAGCTGTTGATGACTCCATTTCAGCCTTTGCCCGGGGAGGAGGGCTTGACATTGTGGGGAAGAGGTTATCAGCACTTGCAGACTCATTTAAGGTTCCCTTTGAGTTTCATGCTGTAGGGGTTGCTGCTTCTGAGGTACAACTTCAACACCTTGAGCTTCGACCAGGTGAAGCCATTGCTGTCAATTTTGCCATGATGCTGCACCACGTGCCAGATCAAAGCTTAGAGGGTCAGAATCACAGAGACAGATTGTTGAGACTGGCAAAGTTCTTATCTCCCAAGGTAGTGACCCTTGTTGAGCAAGAATGTGCAACCAATCATGCTTCCTTCTTCCAACGTTTTGTTCAGGCGTTGAACTATTACTTGGCTGTTTTTGAATCCATTGATGCTGCTCAGCCCAGGGATCACAGGGAGAGGATCAATGTGGAGCAGCACTGTTTGGCTCGAGAGATTGTGAACTTGATAGCATGTGAAGAGGAAGAGAGAGTGGAACGACATGAAACTCTAGAAACCTGGAGATCACGCTTCACAATGGCAGGGTTTACTCCATATCCATTGAGCTCCTTTGTTAATTCTACCATCAAGAATCTGCTAGAGGACTACTCTAGAAATTACACTCTAGAAGAGAGAGATGCTGCTTTATACCTTGGTTGGATGAATCAACCACTAGTTGCCTCTTGTGCTTGGAAGTGA	1518	0.4578	MQTSQKHELCYGPLQNLESYYSSSVQTIEQYCTLESSSTSNSNPGFSPPSSNGSPVLKPQHSLDLSDGSPESESCLTLTQDLDDLRHKIRELETAMLGPDDADILDIENAGGSDAAMSEAEKWKKMMEMISRGDLKEMLCACAYAMAGNDMETAEWLMSELRKMVSVSGNPMQRLGAYMLEALVARLASSGSTIYKGLKCNELTPTELFSYMQILYEICPYFKFGYLSANGAIAEAMKQENEVHIIDFQMYQGSQWVSLIRALAGRPGGPPQIRITAVDDSISAFARGGGLDIVGKRLSALADSFKVPFEFHAVGVAASEVQLQHLELRPGEAIAVNFAMMLHHVPDQSLEGQNHRDRLLRLAKFLSPKVVTLVEQECATNHASFFQRFVQALNYYLAVFESIDAAQPRDHRERINVEQHCLAREIVNLIACEEEERVERHETLETWRSRFTMAGFTPYPLSSFVNSTIKNLLEDYSRNYTLEERDAALYLGWMNQPLVASCAWK	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1264	505	Coils	Coil	75	95	-	-
	Dere05g1264	505	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	110	499	IPR005202	-
	Dere05g1264	505	MobiDBLite	consensus disorder prediction	36	74	-	-
	Dere05g1264	505	Pfam	GRAS domain family	136	505	IPR005202	-
	Dere05g1264	505	ProSiteProfiles	GRAS family profile.	126	505	IPR005202	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1264	Dere-ChrDere05	20526488	20528005	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1264	13	505	GRAS Transcription Factor Family	AT5G48150	59.091	0.0	586

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Dere05g1264		GRAS	8.6e-133	CL0063