Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1262 ATGTTGTATAGGTTTTTTCTTTTCTTTTCTTCTGAATTTCAAATTTTGAAGTCTCATTTTGCTTATAAATTTAGGTTTCGATTCTGTGGAATGGATCACTCAGACATTGAAAATATGGGTGAAGCTAGTATAGATTGGGAACAAGCTCTGAGTCAGTATCAAAAGTTGATAGCCTCGGGGACCAAAACTATGAAAATAAAAGCCATGATGATGCTAGCCCGTCTCTCTAAACATGCCCCTGAGAGTGTATTAGCTCGTATCATACCCCATCTTACTGAGATTCTCGGTGACTACCATTCAAATCATTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTATAGCTTGTCGAGGTGATGGTGGGTTAGCCAAGGAAATAGGTAGACATGGTGCAGCAAATTCCTTATTAAGGTGGTTGTCACATTCTGATGGAGAGTTCCGAGAAGTCCTGATAAAATGTTTGCTAGTTGTCGTCACGTTTTGTAATACAAGTCGAACAGTTGTAGCTAGCAACGGCGGGTTAGAAATTATCATCAGTTTGTTAAATTCTTGTACAGATGATGTTAGACTATACCTGTTGGAAATATTGAGTGCATTGGCATTGCTAAGGGATGTTAGGAGGGCGCTCAATAGGTTAGGAGGTCTTAACTTTCTTGTGGAGGCTGCTGGCTGTGGCAGCATGGTCTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTACTTGGGGTCCCAAGACGGGCCAGGCGTACGCTTGTCCAACTGGGAGTGATACCAGTGCTTGTTGAGTTGCTTCGTAATGGAGATCACACCACGAAACTCGTGGCAGGTAATGCCCTTGGTGTGATCTGTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGTGTTATCTGTCTTTATGCTGAGCTTCTTCAAGGACCTGAACCTTCTGGTAAGGAGATTGCTGAGGATGTATTTTGTTTGCTGGCTGTTGCTGAGGAGAATGCTGTTGAAATCGCCAGACACTTGGTGAGAATTCTTAGAGAAGGCGATAATGAATCAAAGTTATCCGCTGCTGATGTGATGTGGGATCTCTCAGGTTACATGCACTCGACATCTGTGATCCGGGATTCGGGTGCAATTCCAATCCTAGTTGAGCTTTTGGGGAGTGATAGTGAAGAGATAAGGCAGAATGTTTCTGGGACATGTTCTCAGCTGAGTTATAATGAGGCAGATAGAATGGCACTCGCTGAAGCGGGGGCAATACCAATTCTCATCGATATGATGCTGCATGACGAGCTTGAGGAAGTTAGGGATAATGCAGCAGAGGCTCTTGTCAACTTTGCTGAAGATTCTTTGTACCGTGACAGTGTATCTGATGCAATAAGTGTTCCTTCATTCAGATATATGCAGAACAGACTAATTGGCATCCGTGCTTCGAACGAGCATATGGCTAGATCCTTACGAAGAGTGACTGATTGGCAGCTCACTTGGAACCCTGATCTTATTTAA 1494 0.4331 MLYRFFLFFSSEFQILKSHFAYKFRFRFCGMDHSDIENMGEASIDWEQALSQYQKLIASGTKTMKIKAMMMLARLSKHAPESVLARIIPHLTEILGDYHSNHSLQKASAYCLKCIACRGDGGLAKEIGRHGAANSLLRWLSHSDGEFREVLIKCLLVVVTFCNTSRTVVASNGGLEIIISLLNSCTDDVRLYLLEILSALALLRDVRRALNRLGGLNFLVEAAGCGSMVSRERACQAIGLLGVPRRARRTLVQLGVIPVLVELLRNGDHTTKLVAGNALGVICAHVDYIRPVAQAGVICLYAELLQGPEPSGKEIAEDVFCLLAVAEENAVEIARHLVRILREGDNESKLSAADVMWDLSGYMHSTSVIRDSGAIPILVELLGSDSEEIRQNVSGTCSQLSYNEADRMALAEAGAIPILIDMMLHDELEEVRDNAAEALVNFAEDSLYRDSVSDAISVPSFRYMQNRLIGIRASNEHMARSLRRVTDWQLTWNPDLI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1262 497 SUPERFAMILY ARM repeat 48 185 IPR016024 -
Dere05g1262 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Dere05g1262 497 SUPERFAMILY ARM repeat 168 446 IPR016024 -
Dere05g1262 497 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 351 451 - -
Dere05g1262 497 Gene3D - 362 461 IPR011989 -
Dere05g1262 497 Coils Coil 425 445 - -
Dere05g1262 497 Gene3D - 34 361 IPR011989 -
Dere05g1262 497 Pfam Armadillo/beta-catenin-like repeat 248 284 IPR000225 GO:0005515
Dere05g1262 497 Pfam HEAT repeats 337 439 - -
Dere05g1262 497 SMART arm_5 285 325 IPR000225 GO:0005515
Dere05g1262 497 SMART arm_5 403 444 IPR000225 GO:0005515
Dere05g1262 497 SMART arm_5 162 202 IPR000225 GO:0005515
Dere05g1262 497 SMART arm_5 362 402 IPR000225 GO:0005515
Dere05g1262 497 SMART arm_5 75 117 IPR000225 GO:0005515
Dere05g1262 497 SMART arm_5 244 284 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1262 248 459 U-box Gene Family AT2G23140 26.484 2.46e-10 60.8