Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1259 ATGAATATTGGTCGCATCGACGATAATATGTTTTCATGCTATGCAGGTGTCACGAGAGGGCTTCTTTGCCCCATGCACTTTGTGGATGAGATATTCTTGGTGGCAAAACCTGGGTCGGTAAAAACCTTGGCTTTCATTATTCCGGTCTTGGAAAATTTATATAGAGGGAAGTGGGGGCCTGAAAATGGGGTAGGCAGCATCATCATATCCCCTACAAGAGAATTAGCTGGTCAACTGTTTGATGTTTTAAAATGTGTTGGTCAGCTTCCACAACACATGGATGAAACTCCAAACTTTGATTGTTCACTGATTCAGGTGTTGGTACTAGATGAGGCAGATTGTATTCTTGACCGTGGATTTAAGAAGGAACTGAATGCAATCATCTCATATCTTCCTAAGCATAGACAAACCCTGCTTTTATCTGCAACTCAAACAAAGTCTGTTCAAGATCTTGCCAGACTAAGTTTAAAGGAGCCAGAGTATCTGAGCGTCCATGAAGAGTCTTTGACTGCCACTCCTACTCTCTTTAAGACAGCTTGTCATGATTGTTCCTTTAGACCGAAAGTTAGACATGTTGTGGAGTTTCATAAAGTCACATCTTAA 603 0.4129 MNIGRIDDNMFSCYAGVTRGLLCPMHFVDEIFLVAKPGSVKTLAFIIPVLENLYRGKWGPENGVGSIIISPTRELAGQLFDVLKCVGQLPQHMDETPNFDCSLIQVLVLDEADCILDRGFKKELNAIISYLPKHRQTLLLSATQTKSVQDLARLSLKEPEYLSVHEESLTATPTLFKTACHDCSFRPKVRHVVEFHKVTS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1259 200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 162 IPR014001 -
Dere05g1259 200 PANTHER RNA HELICASE 87 175 - -
Dere05g1259 200 SMART ultradead3 10 179 IPR014001 -
Dere05g1259 200 Gene3D - 88 168 IPR027417 -
Dere05g1259 200 Pfam DEAD/DEAH box helicase 30 85 IPR011545 GO:0003676|GO:0005524
Dere05g1259 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 164 IPR027417 -
Dere05g1259 200 Gene3D - 19 87 IPR027417 -
Dere05g1259 200 Pfam DEAD/DEAH box helicase 88 151 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1259 Dere-ChrDere05 20427856 20429972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1259 64 170 Eukaryotic Initiation Factors Gene Family AT3G19760 27.660 3.84e-08 50.4