Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1256 ATGCTTAAGCCCTCGTTCTACTCCTGGGGGTATTGCACCCGACTAAGAGATGGAAACCAAAGCCAGCATTTTGAACTATTGGTAAACAGTGTACAAAAGCAGAGAAAAAACGCTTATGAACATCACTGCCCTGAAAACCGATTGCTCAATATGCTCCAAAACACACTCAGTTTGAAGCTAACTGTTACTCTAGTGACCCAGCATAATCTACAGCAAGCGAAAGTTCTTGATTCATCAAAGTTGGTAATGCACCCCAAAACTAGCTTTTTCCTCCAACCCATATTCACTCATGGGCTCTCTGGTTCACTACACCTGGTCTTGTTACTTGTGCTACTTATAACATGGGTATGTCAGAAAGCCCAGGCAGGCCATAGAGAAAGTGCAAGAAAAGGACTCTACAATACTGGGGTTTTGTACTACAAACTGACTCTGTTCTGTGGTTTAGCTGTTTGTGTGTTTAATCTTTCATTGTCATTACTGGACTACTTTTACTGGTACAAGAATCATTGCTTAGAAGAGATTGTTACAATTTTGGATTTCGTTATTAAAACTGTTTCCTGGGGTGCCCTTTGTGTTTATTTGCATTCTAGATTCTCCAATTCAGAGGGACGAAACTTCCCCTATCTCTTGAGAATTTGGTGCTGGGTGTACTCCTTTGTTTCTTGTTCTTGCCTTGTTATAGACTTTGTACTCCATAGAAAAAATGTTCTCCTCCCAATTATATACCTCGTTTCTGATATCGGTTCCTCTCTCACGGGTTTGTTTCTCTGTTATGTGGGGTTTTCTGTCAACAATGAGGCAAAACGTGCCCTTCTCGAAGAACCCCTTTTGAATGGTGATTCTAACGTAAGCAGCCGTTCTGAGTCAAATAAGAACACCCCATATTCAAAGGCTGGATTTTTAAGTATTCTTACTTTCTCATGGATGAGTCCTCTAATTGCTGTTGGAAGTAAGAAGACTTTAGACCTTGAGGACCTCCCTCTTCTTTCCAGTGACGACAGCGTTTATGGGGCTTTTCCAACTTTTAGATACAACCTTGAATCAGAGTGTAATACTCTTAGCAGAGTAACCACTCTTAAGCTGGTGAATGCGTTAATTTTCTCAACATGGAAAGGAATTCTTTTATCAGCTTTATTTGCATTCTTATACACATGCGCCTCTTATGTTGGCCCCTTTCTTATTGGCATCTTTGTTCAATATCTCAATGGGCAGCAAAGGTTTAAAAATGAGGGTTATGTTTTGGCAATGGCATTTCTTGGTGCAAAGCTTGTGGAGTGCCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAAGTTGGGATAAGGGTTCAATCAATGTTGGTGGCAACAATCTACGCTAAAGGATTGACCCTTTCATGTCGATCAAAGGAGGGTCGAACTAGTGGGGAAATCATCAACTTAATAACTGTTGATGCTGCTAGGGTTGGTGAGTTTAGTTGGTACATGCATGATCCATGGATGGCTGTTCTACAAGTTACTTTAGCGTTGGTTATTCTGTATAGAAGTGTTGGGATTGCTTCCATAGCTGCCTTTGCTGCTACGGTTCTTCTGATGTTGGCAAACTTGCCATTGGGGTCACTGCAAGAGAAGTTTCAAAGCAAGCTAATGGAGTCAAAAGATACAAGAATGAAGGCCACATCTGAGATTCTAAGGAACATGAGGATTCTAAAGTTGCAAGCATGGGAGATGAAGTTTCTATCAAGGGTTATTGAGATTAGGAAGGTTGAGACAGGATGGCTAAAGAACTTTTTATTCTGTGCAGGAATGACAAGATTCCTCTTCTCTTCTGCGCCGACTTTCATTGCTATGGTTACTTTTGGTGCTTGTACTCTCATAGGGATCCCACTTGACTCAGGGAAGATTTTATCAGCACTGGCCACATTCAGAATTCTTCAGCAGCCCATCTATACCCTTCCTGACACAATCTCAATGATAGCACAAACTAAGGTTTCCCTTGATCGGATTGCATCATTCCTTTGTCTTCATGACTTGCAGTCTGATGTTGTAGAGAAGCTTCCTAGGGATAGTTCTGAAATAGCAATTGAGATAGTAAATGGGAATTTCTCTTGGGATTTATCTTCACCTGTTCCTACATTGCAAAATATAAATGTCAAAATTGTCCATGGCTTCAGGGTTGCAGTTTGTGGTACCGTTGGTTCAGGAAAGTCAAGTTTACTTTCTTGTATACTAGGAGAAGTATCAAAGCTCTCTGGGACATTGAAAGTGTGTGGGACAAAGGCTTATGTTGCCCAGTCCCCGTGGATACAAAGTGGTAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGATAGGGAAAAATATGAGAAGGTTCTAGAAGCATGTTCCTTGACAAAAGACCTAGACATTCTACCATTTGGTGATCAAACTGTTATTGGAGAGAGAGGAATCAATTTGAGTGGTGGACAGAAGCAGAGAATACAAATAGCTCGTGCTCTATACCAAGATGCTGATATATATCTGCTTGATGATCCTTTTAGTGCTGTGGACGCGCATACAGGATCCCACCTGTTTAAGGAGTGTTTGCTTGGCCTTTTGAGTTCAAAAACAGTGTTATATGTGACTCATCAGGTTGAGTTCTTACCTGACGCTGATCTAATATTGGTCATGAGAGATGGAAGGATAACTCAATCAGGGAAGTACAATGACATCCTTAACTCTGGCACCGATTTTATGGAGCTTGTAGGTGCACATAGAGAAGCCTTATCTGCAGTTAATTCATTAGAGAGAAAACCCACCTCTAAAGAACTTAGTAGTACTGTGGATGACACGGACTCATTGATTGCATTTGGAATTGAGGAAAAAATAGAAAACAAAGACGTCCAAAATTGTAAAGCAGATGAAAAAGATGGGTCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAAAAGGGTAAAGTTGGGTTTGAAGTCTACTGGAAATACATCACAACAGCATATGGAGGAGCTCTTGTACCCTTCATATTACTCTCTCAAGTGCTTTTTCAGGTTCTTCAAATTGGGAGCAATTATTGGATGGCTTGGGCAACTCCTGTATCAACAACTATGGACCCTCCTGTTGGAAGCTTTACACTTCTGGTTGTTTATGTTGCTTTGGCTATTGGAAGTTCCTTTTGCAACCTTGTTAGAACAATGCTTCTTTTCCTTGCTGGATATAAGACTGCCACTACACTCTTCAATAAATTGCATATGTGCTTCTTCCGAGCCCCTATGGCCTTTTTTGATGCCACTCCAAGCGGACGAATCCTAAATAGAGCTTCTACAGACCAAAGTGCAGTAGATATGAGCATTCCAATTCTAGTCGGAGGAGTTGCCTTCTATCTTATTCAGCTCTTTGGAAATATTGCTGTGATGTCTCAGGTTGCATGGCAGGTTTTCATAGTATTTATTCCTGTGGTTGCAGCTTGCATATGGTACCAGCAATACTACTCTGAATCAGCACGAGAATTGTCACGATTGGTTGGTATATGCGAAGCTCCAGTTATTCAACATTTTTCTGAAACCATCTCTGGATCAACAACCATCAGGAGTTTCGATCAAGAAGGAAGATTTCAGGACACAAATATGAAATTGATAGACAGATATTCCCAGCCCAAGTTATACACTGCAACTGCAATGGAATGGCTCTGCTTCCGATTGGATATGTTATCTTCTATAACATTTGCTTTCAGTTTGGTTTTCTTGATTTGTTTTCCAAATGCAATTGGTGTTCCTGGCATTGCGGGCTTGGCTGTGACATATGGGTTTAATCTAAATACATTGCAAGCTGCATTAATTTGGTGTCTTTGCAATATGGAGAATAAAATTATATCAGTAGAAAGAATACTTCAGTATACTACCATCCCAAGTGAGCCTCCTCTGGTAATAGAAGAAAATAGACCAGATTGTTCTTGGCCATCCTTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGATATGCTCCCCACTTGCCTCTTGTCTTGAGAGGTCTTACATGCACTTTCATTGCTGGAGGAAAAACAGGTATTGTGGGAAGAACTGGCAGTGGAAAATCAACACTAGTACAAACACTATTCCGACTGGTTGAACCTGTTGCTGGTCAGATATTGATAGACAGCATCGATATCTCTTCGATTGGACTTCATGATTTAAGGTCCAGATTAAGCATTATTCCTCAGGATCCTACCATGTTTCAAGGGACTGTAAGAAACAATCTAGACCCACTAGAAGAGTACACTGATGAACAGATTTGGGAGGCTCTAGATATGTGCCGACTTGGAGATGAAGTAAGGAAGAAGGAAGGAAAACTTGATTCCATGGTTGCTGAGAATGGAGAAAATTGGAGTATGGGTCAGAGGCAGCTGGTCTGCCTAGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACTGATAACATTATTCAGCAAACTCTGAGGCAGCATTTCTCAGAATGTACAGTCATTACCATTGCACACAGGATAACTTCTATCCTTGACAGTGACATGGTCCTGTTTCTAAACCAAGGGCTTGTTGAGGAATATGATTCACCAAAAAGATTGCTAGAGAACAAATCTTCATCTCTTGCTCAGCTAGTTGCAGAATACACTCGCAGGTCCAACTCGGGTTTTGAAACTTAG 4695 0.4098 MLKPSFYSWGYCTRLRDGNQSQHFELLVNSVQKQRKNAYEHHCPENRLLNMLQNTLSLKLTVTLVTQHNLQQAKVLDSSKLVMHPKTSFFLQPIFTHGLSGSLHLVLLLVLLITWVCQKAQAGHRESARKGLYNTGVLYYKLTLFCGLAVCVFNLSLSLLDYFYWYKNHCLEEIVTILDFVIKTVSWGALCVYLHSRFSNSEGRNFPYLLRIWCWVYSFVSCSCLVIDFVLHRKNVLLPIIYLVSDIGSSLTGLFLCYVGFSVNNEAKRALLEEPLLNGDSNVSSRSESNKNTPYSKAGFLSILTFSWMSPLIAVGSKKTLDLEDLPLLSSDDSVYGAFPTFRYNLESECNTLSRVTTLKLVNALIFSTWKGILLSALFAFLYTCASYVGPFLIGIFVQYLNGQQRFKNEGYVLAMAFLGAKLVECLSQRHWMFRFQQVGIRVQSMLVATIYAKGLTLSCRSKEGRTSGEIINLITVDAARVGEFSWYMHDPWMAVLQVTLALVILYRSVGIASIAAFAATVLLMLANLPLGSLQEKFQSKLMESKDTRMKATSEILRNMRILKLQAWEMKFLSRVIEIRKVETGWLKNFLFCAGMTRFLFSSAPTFIAMVTFGACTLIGIPLDSGKILSALATFRILQQPIYTLPDTISMIAQTKVSLDRIASFLCLHDLQSDVVEKLPRDSSEIAIEIVNGNFSWDLSSPVPTLQNINVKIVHGFRVAVCGTVGSGKSSLLSCILGEVSKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLDILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLSSKTVLYVTHQVEFLPDADLILVMRDGRITQSGKYNDILNSGTDFMELVGAHREALSAVNSLERKPTSKELSSTVDDTDSLIAFGIEEKIENKDVQNCKADEKDGSKGQLVQEEEREKGKVGFEVYWKYITTAYGGALVPFILLSQVLFQVLQIGSNYWMAWATPVSTTMDPPVGSFTLLVVYVALAIGSSFCNLVRTMLLFLAGYKTATTLFNKLHMCFFRAPMAFFDATPSGRILNRASTDQSAVDMSIPILVGGVAFYLIQLFGNIAVMSQVAWQVFIVFIPVVAACIWYQQYYSESARELSRLVGICEAPVIQHFSETISGSTTIRSFDQEGRFQDTNMKLIDRYSQPKLYTATAMEWLCFRLDMLSSITFAFSLVFLICFPNAIGVPGIAGLAVTYGFNLNTLQAALIWCLCNMENKIISVERILQYTTIPSEPPLVIEENRPDCSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFIAGGKTGIVGRTGSGKSTLVQTLFRLVEPVAGQILIDSIDISSIGLHDLRSRLSIIPQDPTMFQGTVRNNLDPLEEYTDEQIWEALDMCRLGDEVRKKEGKLDSMVAENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTLRQHFSECTVITIAHRITSILDSDMVLFLNQGLVEEYDSPKRLLENKSSSLAQLVAEYTRRSNSGFET 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1256 1564 FunFam ABC transporter C family member 3 1301 1553 - -
Dere05g1256 1564 FunFam ABC transporter C family member 5 673 920 - -
Dere05g1256 1564 Pfam ABC transporter 1336 1483 IPR003439 GO:0005524
Dere05g1256 1564 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 688 911 IPR003439 GO:0005524
Dere05g1256 1564 SMART AAA_5 1344 1529 IPR003593 GO:0016887
Dere05g1256 1564 SMART AAA_5 715 888 IPR003593 GO:0016887
Dere05g1256 1564 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 295 1553 - -
Dere05g1256 1564 Gene3D - 1301 1554 IPR027417 -
Dere05g1256 1564 CDD ABCC_MRP_domain2 1316 1536 - -
Dere05g1256 1564 ProSitePatterns ABC transporters family signature. 813 827 IPR017871 GO:0005524|GO:0016887
Dere05g1256 1564 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 374 654 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1256 1564 CDD ABCC_MRP_domain1 688 888 - -
Dere05g1256 1564 Pfam ABC transporter transmembrane region 1001 1241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1256 1564 Pfam ABC transporter transmembrane region 374 641 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1256 1564 Gene3D ABC transporter type 1, transmembrane domain 961 1299 IPR036640 GO:0005524|GO:0016020
Dere05g1256 1564 Gene3D ABC transporter type 1, transmembrane domain 346 669 IPR036640 GO:0005524|GO:0016020
Dere05g1256 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 910 IPR027417 -
Dere05g1256 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1311 1544 IPR027417 -
Dere05g1256 1564 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1318 1552 IPR003439 GO:0005524
Dere05g1256 1564 Pfam ABC transporter 706 840 IPR003439 GO:0005524
Dere05g1256 1564 Gene3D - 670 934 IPR027417 -
Dere05g1256 1564 FunFam ABC transporter C family member 10 357 670 - -
Dere05g1256 1564 SUPERFAMILY ABC transporter transmembrane region 999 1299 IPR036640 GO:0005524|GO:0016020
Dere05g1256 1564 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1001 1241 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1256 1564 CDD ABC_6TM_ABCC_D1 375 662 IPR044746 GO:0140359
Dere05g1256 1564 SUPERFAMILY ABC transporter transmembrane region 365 662 IPR036640 GO:0005524|GO:0016020
Dere05g1256 1564 CDD ABC_6TM_ABCC_D2 999 1293 IPR044726 GO:0140359
Dere05g1256 1564 FunFam ABC transporter C family member 5 962 1299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1256 Dere-ChrDere05 20403419 20410041 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1256 682 928 Calmodulin-binding Proteins AT2G36910 30.337 2.36e-27 119