Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1252 ATGTCGTTTGTTTTTCCCCGCCACTTGCTAATGCACTCTGCCTCGAGTCTTCTCCTAAAACCCATTTTCTTACACTTGTTGTCTGGTTCTCTCCACCTCGTTTTGATAGTAGCGTTTTTCGTCTCATGGGTGTGGAATAAAATCTCAGTGGGCGCTGTAAATGGTTCCAAAGAGAAATTCAGGAGCGCTCTGTATAAGAGGACTCTGTTTTGTTCTTTGGGTGCTTCTGCTTTTAATCTTGTTATGTGTCTAGTGTATTACTTCTATTGGTATAGAAATGGTTGGTCAGATGAAAAGTTCGTGACCCTTATGGATTTAGCGCTTAAAACAGTTGCTTGGGGTGTCGTTTGTTTTTACTTACGCGCAGGATTCTTCGATTCAGGTCAAAGGAAATTTCCATTCTTCTTCAGAGCTTGGTGCGCTTTCTATCTCCTTATCTCGTGTTATGGCTCTATGCTGGACATTATTCTAAATGAAAAACACGTTTCGTTACCTATTCCGTCCTTGATTTCTGATGGTGTCTCCTTTTTTGTGGGTTTATTCATTTGTTACGTGGCGTTTTTTTTGAAAAACGAGGGAGAAGATAGCATTCTTCAAGAACCTCTTTTAAATGGTAATACTGATGTTAATAATTCGTCGGAGTCAATTAAGACGAAGGGGGCAGAAACCGTTACTCCTTACTCTAAGGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGGTGGGTCCTCTGATTGCTGCTGGCAAAAAGAAGACTTTAGACCTTGAGGATGTCCCACAACTAACTAGTTGTGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGAAATAAGCTTGAGGCAGACTGTGGTACAATAAACAGAGTGACCACGGTTAAGCTGGTGAAGTCCTTAATACTCTCAGCTTGGAAAGACATTTTTGCAACAGCTATTTTTGCACTTATACACACATTGGCTTCTTATGTTGGTCCATATCTCATTGACACATTTGTTCAATACCTCAATGGCAAACAAAAATTTAAGAATGAGGGGTATCTTTTGGTGACTGCATTTTTTGTTGCAAAGCTTATAGAGTGCCTGTCACAGAGACACTGGATGTTTAGGTTGCAGCAGGTTGGAATTAGGATCCGAGCACTGCTTGTGACAATGATCTATAGTAAAGGTTTGACCCTTTCATGTCAGTCCAAGCAGGGCCACACTACTGGAGAAATAATCAATTTCATGACAGTTGATGCTGAAAGAGTTGGCGACTTCAGTTGGTACATGCATGACCTGTGGATGGTAGTTCTGCAAGTTGCATTGGCCTTGTTTATTTTGTACAAAAATCTTGGGTTGGCTTCGGTTTCCACTTTTGTTGCAACAGTTATTGTAATGTTGGCAAATGTTCCGTTGGGGTCATTGCAAGAGAAGTTTCAAGACAAGTTGATGGAGTCAAAAGATAGCAGAATGAAGGCCACATCTGAGATTTTAAGGAACATGAGGATTCTCAAACTACAGGGATGGGAAATGAAGTTTCTGTCTAAGGTTACTGAACTTAGGAAGACAGAGCAAGGCTGGTTAAAGAAATATGTTTATACATCAGCCATTACCACATTTGTCTTTTGGGGTGCGCCCACATTTATTTCTGTTGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCGCTAGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGAATACTTCAGGAGCCCATTTATAGTCTTCCAGACACAATTTCAATGATAGCACAAACTAAGGTATCTCTGGATAGGATAGCATCATTCTTTCGTCTTGACGACTTGCAGTCTGATGATATAGAGAAGCTTCCAAGGGGTAGTTCTAACACAGCAATTGAAGTAGTTGATGGTCATTTCTCTTGGGATTTATCTTCTCCTGATACAACATTGAAAGGTATAAATCTGACAATCTTTCACGGCATGAGAGTTGCTGTTTGTGGTACTGTTGGCTCAGGCAAGTCTAGTCTACTTTCTTGCATTTTGGGAGAAGTGCCAAAGATATCAGGAACCTTGAAGGTTTGTGGAACTAAGGCCTTTGTTGCTCAGTCTCCATGGATACAAAGTGGGAAGATAGAAGAGAATATATTATTTGGTAAGGAGATGGATAGGGAAAGGTACGAGGAGGTCCTTGAAGCATGCTCCCTGAAGAAGGACCTGGAGATTTTGTCATTTGGTGATCAGACAATTATTGGAGAGAGGGGAATCAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCACGAGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCCCACCTTTTTAAGGAATGTTTACTGGGTCTTTTAAGTTCAAAGACAGTTATTTATGTTACGCATCAAGTAGAGTTTTTACCTGCTGGTGACCTTATCTTGGTCATGAAAGATGGGAAAATTACTCAATGCGGAAAGTATAATGATTTGCTCAACTCAGGGACCGACTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTATCTGCACTCAATACATTGGATGGAGGGGAAGTGTCTGATAAATTGAGGACGGCAGAACAAGATGTAAATACATCCAGTGCTCAAGGTACAGAAGAAGAGGCAAACGAAGATATGCAAAGTGGTCAAACAGATGATGTAGTTGAACCAAAAGGCCAGCTTATTCAAGAGGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGCAATATATTACAACAGCATATGGAGGAGCTCTTATACCAATTATATTGTTGGCTCAAATTCTGTTTCAACTACTTCAAATTGGAAGCAACTATTGGATGGCCTGGGCAACTCCCATTTCTTCAGATGTGGAACCACCTGTCGGAGCCTATATGCTTATAATTGTCTATGTTGCTATGGCCATTGGAAGTTCTTTCTGCATCCTTGCCAGAGCGGTGCTTCTTTCCACAGTTGGTTATAAGACTGCGACTCTACTCTTCAATAAAATGCACTTATGCATTTTCCGTGCTCCTATGACATTTTTTGATGCCACTCCAAGTGGACGAATCATTAATAGAGCTTCTACGGACCAAAGTGCAGTGGATATAAACATTCCTTATCAAGTTGGATCATTTGCCTTCTCTATGATCCAGCTCCTGGGAATTATAGCGGTAATGTCTCAAGCTGCGTGGCAGGTTTTCATCATCTTTATACCTGTGATATCAATCAGCATTTGGTATCAGCAATACTATTTACCATCAGCTCGAGAACTGTCACGGTTAGTTGGTGTATGCAAAGCTCCAGTCATTCAACACTTTGCCGAAACAATTTCAGGAACAACAACCATCAGGAGCTTTGACCAAGAGTCAAGATTTCTGCAAATGAATATGAAACTCATGGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGTGCTATGGAATGGCTATGTTTCCGCTTGGATATGTTGTCTTCCATAACATTTGCCTTTTCCTTGATATTCTTGATAACCATGCCACAGGGAGTCATAGATCCGGGCCTTGCTGGTTTAGCTGTCACATATGGGCTTAATCTGAACATGTTACAAGCTTGGGTGATATGGAATCTTTGCAACATGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTACACTTGCATTCCAAGTGAGCCTCCTCTTGTAATAGAAGAAAATCGACCTGATCCTTCTTGGCCATCGTGTGGGGAAGTTGATATTCGTGATTTGCAGGCTCGTTATGCCACACATCTGCCTCTTGTTTTGCGTGGCATCACATGTAAATTTCCTGGAGGACTGAAAACCGGCATTGTTGGGAGAACAGGAAGTGGTAAAACAACTCTTATCCAAACACTTTTCCGAATGATTGAGCCAACTGCTGGGCAAATTACGATTGACGGCATCAATATCTCTTCCATTGGACTTCATGATTTGAGGTCTAGACTAAGTATTATCCCTCAAGATCCAACTATGTTTGAAGGGACAGTGAGAAGTAACCTAGACCCATTGGAAGAGTACACAGATGAACAAATTTGGGAGGCTCTGGATAAGTGTCGACTCGGAGATGAAGTTCGAAAGAAAGAAGGAAAGCTAGACTCTACAGTTACTGAGAACGGTGAGAATTGGAGTGTGGGTCAGAGGCAGTTGGTGTGCCTTGGTAGGGTGCTACTTAAGAGAAGTAAGGTGTTGGTTCTTGATGAAGCTACTGCATCGGTTGATACTGCGACAGATAATTTGATTCAGCAAACTCTTAGGCAGCACTTCTCTGATTGTACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGACATGGTCTTGTTTCTCAATCAAGGACTCGTTGAGGAGTATGATTCTCCGACAAGATTGCTAGAGGACAAGTCATCTTCTTTTGCCCAACTTGTTGCAGAGTATACCATGAGATCCAAGTCCAGTTTTGAGTAA 4485 0.4111 MSFVFPRHLLMHSASSLLLKPIFLHLLSGSLHLVLIVAFFVSWVWNKISVGAVNGSKEKFRSALYKRTLFCSLGASAFNLVMCLVYYFYWYRNGWSDEKFVTLMDLALKTVAWGVVCFYLRAGFFDSGQRKFPFFFRAWCAFYLLISCYGSMLDIILNEKHVSLPIPSLISDGVSFFVGLFICYVAFFLKNEGEDSILQEPLLNGNTDVNNSSESIKTKGAETVTPYSKAGIFSILTFSWVGPLIAAGKKKTLDLEDVPQLTSCDSVVGAFPTFRNKLEADCGTINRVTTVKLVKSLILSAWKDIFATAIFALIHTLASYVGPYLIDTFVQYLNGKQKFKNEGYLLVTAFFVAKLIECLSQRHWMFRLQQVGIRIRALLVTMIYSKGLTLSCQSKQGHTTGEIINFMTVDAERVGDFSWYMHDLWMVVLQVALALFILYKNLGLASVSTFVATVIVMLANVPLGSLQEKFQDKLMESKDSRMKATSEILRNMRILKLQGWEMKFLSKVTELRKTEQGWLKKYVYTSAITTFVFWGAPTFISVVTFGTCMLIGIPLESGKILSALATFRILQEPIYSLPDTISMIAQTKVSLDRIASFFRLDDLQSDDIEKLPRGSSNTAIEVVDGHFSWDLSSPDTTLKGINLTIFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKVCGTKAFVAQSPWIQSGKIEENILFGKEMDRERYEEVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYVTHQVEFLPAGDLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHKKALSALNTLDGGEVSDKLRTAEQDVNTSSAQGTEEEANEDMQSGQTDDVVEPKGQLIQEEEREKGKVGFSVYWQYITTAYGGALIPIILLAQILFQLLQIGSNYWMAWATPISSDVEPPVGAYMLIIVYVAMAIGSSFCILARAVLLSTVGYKTATLLFNKMHLCIFRAPMTFFDATPSGRIINRASTDQSAVDINIPYQVGSFAFSMIQLLGIIAVMSQAAWQVFIIFIPVISISIWYQQYYLPSARELSRLVGVCKAPVIQHFAETISGTTTIRSFDQESRFLQMNMKLMDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLITMPQGVIDPGLAGLAVTYGLNLNMLQAWVIWNLCNMENKIISVERILQYTCIPSEPPLVIEENRPDPSWPSCGEVDIRDLQARYATHLPLVLRGITCKFPGGLKTGIVGRTGSGKTTLIQTLFRMIEPTAGQITIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCRLGDEVRKKEGKLDSTVTENGENWSVGQRQLVCLGRVLLKRSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLFLNQGLVEEYDSPTRLLEDKSSSFAQLVAEYTMRSKSSFE 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1252 1494 MobiDBLite consensus disorder prediction 867 894 - -
Dere05g1252 1494 CDD ABC_6TM_ABCC_D1 308 594 IPR044746 GO:0140359
Dere05g1252 1494 Gene3D ABC transporter type 1, transmembrane domain 294 594 IPR036640 GO:0005524|GO:0016020
Dere05g1252 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 932 1212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1252 1494 SUPERFAMILY ABC transporter transmembrane region 929 1231 IPR036640 GO:0005524|GO:0016020
Dere05g1252 1494 CDD ABC_6TM_ABCC_D2 930 1224 IPR044726 GO:0140359
Dere05g1252 1494 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Dere05g1252 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1252 1494 Pfam ABC transporter 638 772 IPR003439 GO:0005524
Dere05g1252 1494 SUPERFAMILY ABC transporter transmembrane region 295 594 IPR036640 GO:0005524|GO:0016020
Dere05g1252 1494 Pfam ABC transporter 1266 1414 IPR003439 GO:0005524
Dere05g1252 1494 FunFam ABC transporter C family member 5 605 852 - -
Dere05g1252 1494 CDD ABCC_MRP_domain2 1247 1467 - -
Dere05g1252 1494 Gene3D - 1232 1485 IPR027417 -
Dere05g1252 1494 Pfam ABC transporter transmembrane region 306 573 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1252 1494 Pfam ABC transporter transmembrane region 932 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1252 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 843 IPR003439 GO:0005524
Dere05g1252 1494 SMART AAA_5 1275 1460 IPR003593 GO:0016887
Dere05g1252 1494 SMART AAA_5 647 820 IPR003593 GO:0016887
Dere05g1252 1494 Gene3D - 595 855 IPR027417 -
Dere05g1252 1494 FunFam ABC transporter C family member 10 289 602 - -
Dere05g1252 1494 FunFam ABC transporter C family member 3 1232 1484 - -
Dere05g1252 1494 FunFam ABC transporter C family member 5 894 1230 - -
Dere05g1252 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 842 IPR027417 -
Dere05g1252 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1479 IPR027417 -
Dere05g1252 1494 CDD ABCC_MRP_domain1 620 820 - -
Dere05g1252 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1249 1483 IPR003439 GO:0005524
Dere05g1252 1494 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 227 1483 - -
Dere05g1252 1494 Gene3D ABC transporter type 1, transmembrane domain 894 1230 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1252 Dere-ChrDere05 20363584 20369437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1252 620 849 Calmodulin-binding Proteins AT2G36910 30.279 1.03e-23 107