Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1251 ATGATAAGGAACATGTCAGAGTTGAAGGGGACAGGAGAGATTTATGGAGGGGTTGAGTTTGGGTTTGAAGTTCAGGTTCTCGCTAGGTCTTTGAAGTTTGGCCAGAGTGAGGAAGGGGTGTGGAATAAAATCGCAGTGGGTGCTAGAGTTGGTTCCGAAGAGAAATTCAGGAGCCCACTGTATAGGAGGACTCTATTTTGTTCTTTGGGGGCTTCTGCTTTTAATCTTGTCATGTGTCTAGTGTATTACTTTTATTGGTACAGAAATGGTTGGTCAGATGAAAAGTTCGTGACCCTTATGGATTTAGCGCTTAAGACAGTTGCTTGGGGTGTCGTTTGTGCTTACTTGCGGTCAGGATTCTTCAATTCAGGTGGAAGGAGATTTCCATTCTTCTTCAGAGCTTGGTGCGCCTTCTACCTCCTTATCTCGTGTTATGGCTTTATGCTGGACATTATTCCCAATGAACAACACGTTTCGTTACCTATACAATACTTGATTTCTGATGGGGTCTCCTTTTTTGTGGGTTTATTCTTTTGTTACGTGGGGCTTTTTTCAAAAAATGGCGGAGAAGATAGCATTCTTCAAGAACCTCTTTTGAATGGTAGTACTGATGTTAGTAAGGCGTCGGAGTCAAATAAGACGAAGGGGGCAGAAACTGTTACTCCTTACACTAATGCTGGAATTTTCAGCATTCTTACCTTCTCCTGGGTGGGTCCTCTGATTGCTGCTGGCCAAAAAAAGACTTTAGACCATGAGGATGTCCCACAACTAGCTAGTTGTGACAGTGTAGTTGGAGCTTTTCCAACTTTCAGAAATAAACTTGAGGCAGACTGTGGTACAATAAACAGAGTGACCACAGTTAAGCTAGTGAAGTCCTTAATACTCTCAGCTTGGAAAGAGATTTTTGCATCAGCTATTTTTGCACTGTTAAACACATTGGCTTCTTATGTTGGTCCCTATCTCATTGAAACATTTGTTCAATACCTCTATGGCAAACAAAAATTGAAGATTGAGGGGTATCTTTTGGTGACTGTATTTTTTGTTGCAAAGCTTATAGAGTGCCTGTCACAGAGACATTGGATGTTTAGGTTGCAGCAGGTTGGAATTAGGATACGAGCACTGCTTGTGACACTGATCTATAGTAAAGGTTTAACCCTTTCATGTCAGTCCAAGCAGGGCCACACTACTGGGGAAATAATCAATTTCATTTCAGTTGATGCTGAAAGGGTTGGCCTCTACAGTTGGTACATGCATGATCTGTGGATGGTAGTTCTGCAAGTTGCATTGGCCTTGTTTATTTTGTATAAAAATTTTGGGATGGCTTCGATTTCGACTTTTGTTGCAATTGTTATTGTAATGTCAGCAAATGTTCCCTTGGGTTCAATGCAAGAGAAGTTTCAAGACAAGTTGATGGAGTCAAAAGATAGAAGAATGAAGGCCACATCTGAGATTTTAAGGAACATGAGAATTCTCAAACTTCATGGATGGGAAATGAAGTTTCTGTCTAAGGTTATTGAACTGAGGAAGAAAGAGCAAGGCTGGTTAAGGAAATATGTTTATACAACAGCCACGGCCACATTTGTCATTTGGGGTGCACCCACATTTGTTTCTGTGGTTACTTTTGGTACTTGTATGCTTATAGGGACCCCACTGGAATCAGGGAAGATCTTGTCTGCATTTGCAACATTCCGAATACTTCAAGAGCCCATTTATTATCTTCCAGAAACGATTTCAATGATAGCACAAACTAAGGTATCTCTGGATAGGATTGCATCATTCCTTCGTCTTGAAGACTTGCAGTCTGATGTTATAGAGAAGCTTCCAAGGGGTAGTTCTAACATGGCAATTGAAGTAGTAAATGGTAATTTCTCTTGGGATTTATCTTCCCCGAAATCAACATTGAAAGGTATAAATCTGACAATCTTTCACGGAATGAGAGTTGCTGTTTGTGGTACTGTTGGCTCAGGCAAGTCTAGTCTACTATCTTGCATTTTGGGAGAAGTGCCAAAGATATCAGGAACCTTGAAGGTTTGTGGAACTAAGGCCTTTGTTGCTCAGTCTCCATGGATACAAAGTGGGAAGATAGAAGAGAATATATTATTTGGTAAGGAGATGGATAGGGAAAGGTACGAGGAGGTCCTTGAAGCATGCTCCCTGAAGAAGGACCTGGAAATTTTGTCCCTTGGCGATCAGACAATTATTGGAGAGAGGGGAATCAATTTGAGCGGTGGACAGAAACAGAGAATACAAATTGCACGAGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACTGGATCCCACCTCTTTAAGGAATGTTTACTAGGCCTTCTAAGTTCAAAGACAGTTATTTATGTTACACATCAAGTAGAGTTTTTACCTGCTGCTGACCTTATCTTGGTCATGAAAGATGGGAAAATTACTCAATGTGAAAAGTATAGTAATTTGCTCAACTCAGGGACCGACTTTATGGAACTTGTTAGTGCACATAAAAAAGCTTTGTCTGCGCTTGATACATTGGATGGAGGGGAAGTATCTGATAAATTGAGGACAGCTGAACATGACGTAAATATATCCAGTGCTCAAGTTATAGAAGAAAAGGAGGCAAACAAAGATATGCAAAACGACAAAACAGAAGATACAGTTGAACCAAAAGGCCAGCTTATTCAAGAGGAAGAAAGGGAGAAAGGTAAAGTTGGGCTTTCAGTCTATAGGAAATATATTACAACAGCATATGGAGGAGCTCTTGTTCCATTTATATTGTTAGCTCAAATTCTGTTTCAACTTCTTCAAATTGGAGGCAACTATTGGATGGCCTGGGTAGCTCCCATTTCTTCAGATGTGAAACCACCTGTCGGACCCAATATGCTTATAATTGTCTATGTTGCAACGGCCATAGGAAGTTCTTTTTGCATCCTTGCCAGAGAGGTGCTTCTTTCCACAGCTGGTTATAAGACCGCAACTCTACTCTTCAATAAAATGCACTTATGCATTTTCCGTGCACCTATGTCATTTTTTGATGCCACTCCAAGTGGGCGAATCATTAATAGAGCTTCTACGGACCAAAGTGCAGTGGATTTAGACATTCCTTATCAATTAGGGTCATTTGCCTTCTCTATGATCCAGCTCCTGGGAATTATAGCAGTGATGTCACAGGCTGCATGGCATGTTTTCATCAGCTTTATCCCTGTGATATCAATCAGCATTTGGTATCTGCAATATTATTTGCCATCAGCTCGAGAATTATCACGGTTAGTGGGAGTATGCAAAGCTCCAGTCATTCAACACTTTGCCGAAACAGTTACAGGAACAGCAACCATCAGGAGCTTTGATCAAGAGTCAAGATTTCTGCAAACAAATATGAAACTGATGGATGGGTATTCTCGGCTGAGGTTCAATATTGTTGGTGCTATGGAATGGTTGTGTTTCCGATTGGATATGTTGTCTTCTATCACATTTGCCTTTTCTTTGATATTCTTGATATGTATGCCATGGGGAGTCATAGATCCAGGCATTGCTGGTTTGGCTGTTACATATGGACTTAATATGAACGTGTTACAAGCTTCGGTGATATGGAATCTTTGCAAGATGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTACACTAGCATTTTAAGTGAGCCTCCTCTTGTAAAAGAGGAAAATCGACCCGATCCTTCTTGGCCGTCACATGGAGAAGTTGATATTTGTGATTTGCAGGCTCGTTATGCCCCGCATCTGCCTCTTGTGTTGCGTGGCATCACATGTAAATTTCCTGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAAACAACTCTCATACAAGCACTTTTCCGAATGATTGAGCCAACTGCTGGGCAAATTATGATTGGCGGTATCAATATCTCTTCCATTGGACTGCATGATTTGAGGTCTAGACTAAGTATTATCCCTCAAGATCCTACTATGTTTGAAGGGACAGTGAGAAGTAACCTGGACCCACTGGAAGAGTACACGGATGAACAAATATGGGAGGCTCTGGGTAAGTGTCAACTTGGAGATGAAGTTCAAAAGAAAGAAGGACAGCTAGACTCTGCAGTTACTGAGAACGGTGAGAATTGGAGTGTGGGCCAGAGGCAATTGGTGTGCCTTGGTAGGGTGCTTCTTAAGAGAAGTAAGGTGTTAGTGCTTGATGAAGCTACTGCGTCGGTTGATATTGCAACAGATAATTTGATACAGCAAACTCTTAGGCAGCACTTCTCTGATTGTACAGTCATTACCGTTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTCTTGTTTCTCAATCAAGGACTAAATGAGGAGTATGATTCTCCGAGAAAATTGCTAGAGGATAAGTCGTCGGCTTTTGCCCAACTTGTTGCAGAGTATACCATTAGATCCAAGTCCAGTCTTGAGGAGTAA 4479 0.4115 MIRNMSELKGTGEIYGGVEFGFEVQVLARSLKFGQSEEGVWNKIAVGARVGSEEKFRSPLYRRTLFCSLGASAFNLVMCLVYYFYWYRNGWSDEKFVTLMDLALKTVAWGVVCAYLRSGFFNSGGRRFPFFFRAWCAFYLLISCYGFMLDIIPNEQHVSLPIQYLISDGVSFFVGLFFCYVGLFSKNGGEDSILQEPLLNGSTDVSKASESNKTKGAETVTPYTNAGIFSILTFSWVGPLIAAGQKKTLDHEDVPQLASCDSVVGAFPTFRNKLEADCGTINRVTTVKLVKSLILSAWKEIFASAIFALLNTLASYVGPYLIETFVQYLYGKQKLKIEGYLLVTVFFVAKLIECLSQRHWMFRLQQVGIRIRALLVTLIYSKGLTLSCQSKQGHTTGEIINFISVDAERVGLYSWYMHDLWMVVLQVALALFILYKNFGMASISTFVAIVIVMSANVPLGSMQEKFQDKLMESKDRRMKATSEILRNMRILKLHGWEMKFLSKVIELRKKEQGWLRKYVYTTATATFVIWGAPTFVSVVTFGTCMLIGTPLESGKILSAFATFRILQEPIYYLPETISMIAQTKVSLDRIASFLRLEDLQSDVIEKLPRGSSNMAIEVVNGNFSWDLSSPKSTLKGINLTIFHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLKVCGTKAFVAQSPWIQSGKIEENILFGKEMDRERYEEVLEACSLKKDLEILSLGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYVTHQVEFLPAADLILVMKDGKITQCEKYSNLLNSGTDFMELVSAHKKALSALDTLDGGEVSDKLRTAEHDVNISSAQVIEEKEANKDMQNDKTEDTVEPKGQLIQEEEREKGKVGLSVYRKYITTAYGGALVPFILLAQILFQLLQIGGNYWMAWVAPISSDVKPPVGPNMLIIVYVATAIGSSFCILAREVLLSTAGYKTATLLFNKMHLCIFRAPMSFFDATPSGRIINRASTDQSAVDLDIPYQLGSFAFSMIQLLGIIAVMSQAAWHVFISFIPVISISIWYLQYYLPSARELSRLVGVCKAPVIQHFAETVTGTATIRSFDQESRFLQTNMKLMDGYSRLRFNIVGAMEWLCFRLDMLSSITFAFSLIFLICMPWGVIDPGIAGLAVTYGLNMNVLQASVIWNLCKMENKIISVERILQYTSILSEPPLVKEENRPDPSWPSHGEVDICDLQARYAPHLPLVLRGITCKFPGGLKTGIVGRTGSGKTTLIQALFRMIEPTAGQIMIGGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALGKCQLGDEVQKKEGQLDSAVTENGENWSVGQRQLVCLGRVLLKRSKVLVLDEATASVDIATDNLIQQTLRQHFSDCTVITVAHRITSVLDSDMVLFLNQGLNEEYDSPRKLLEDKSSAFAQLVAEYTIRSKSSLEE 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1251 1492 Pfam ABC transporter 1263 1411 IPR003439 GO:0005524
Dere05g1251 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 929 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1251 1492 Gene3D ABC transporter type 1, transmembrane domain 281 595 IPR036640 GO:0005524|GO:0016020
Dere05g1251 1492 Gene3D ABC transporter type 1, transmembrane domain 890 1226 IPR036640 GO:0005524|GO:0016020
Dere05g1251 1492 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Dere05g1251 1492 SUPERFAMILY ABC transporter transmembrane region 292 597 IPR036640 GO:0005524|GO:0016020
Dere05g1251 1492 FunFam ABC transporter C family member 5 601 848 - -
Dere05g1251 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1478 IPR027417 -
Dere05g1251 1492 FunFam ABC transporter C family member 5 890 1227 - -
Dere05g1251 1492 Gene3D - 596 851 IPR027417 -
Dere05g1251 1492 CDD ABCC_MRP_domain1 616 816 - -
Dere05g1251 1492 FunFam ABC transporter C family member 3 1229 1481 - -
Dere05g1251 1492 CDD ABCC_MRP_domain2 1244 1464 - -
Dere05g1251 1492 CDD ABC_6TM_ABCC_D1 304 590 IPR044746 GO:0140359
Dere05g1251 1492 Pfam ABC transporter transmembrane region 929 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1251 1492 Pfam ABC transporter transmembrane region 302 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1251 1492 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Dere05g1251 1492 SUPERFAMILY ABC transporter transmembrane region 927 1228 IPR036640 GO:0005524|GO:0016020
Dere05g1251 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1480 IPR003439 GO:0005524
Dere05g1251 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 838 IPR027417 -
Dere05g1251 1492 SMART AAA_5 643 816 IPR003593 GO:0016887
Dere05g1251 1492 SMART AAA_5 1272 1457 IPR003593 GO:0016887
Dere05g1251 1492 CDD ABC_6TM_ABCC_D2 927 1221 IPR044726 GO:0140359
Dere05g1251 1492 Gene3D - 1229 1482 IPR027417 -
Dere05g1251 1492 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 302 582 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1251 1492 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 839 IPR003439 GO:0005524
Dere05g1251 1492 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 224 1480 - -
Dere05g1251 1492 FunFam ABC transporter C family member 10 285 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1251 Dere-ChrDere05 20304156 20312444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1251 616 845 Calmodulin-binding Proteins AT2G36910 29.600 2.32e-23 106