Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1247 ATGAACGAAGCGGCTCTTACCCTTCCTTCACTGGGAACGAAGCTCTGGGAACGAAGAAGAGCTTCAATGGCTGTTTCTTCCATATCTGCTGCGTCATTAGTACCTTCTCCTTCACTCTTCTCACCATCTTCCCTGAATTATAAAGCGAAATTCTCTCTTTTCTTCTTCCACAATGGCACAAACACCTTGAAGCTTAAAAGCTCAAAACCTCTGCAATCATCAACTAGGGTTTATGCTGCTCCTGAAGTGTTGCATTCACCAGAATCCGTTGAGCCTCCTCCAGAAAGTCAAGATGACTCCGACCCCACCACCCTTGAGGTTGGAGATTTGAGAACACCAAGTACTTCATCACTTAGCATTGGTGCAGATGCAGATGCGATGGCACCAAAGCAGAAAATTAGAATAAAACTCAGATCTTACTGGGTTCCCCTAATAGAAGATTCATGCAAGCAGATAATGGATGCAGCAAGGAGTACCAATGCAAAAACCATGGGTCCTGTACCTTTACCAACTAAAAAGCGAATTTACTGTGTTCTTAAATCTCCACATGTACATAAGGATGCTCGGTTCCATTTTGAGATAAGAACCCATCAGCGTCTCATTGATATTCTATATCCCACTGCCCAAACAATAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAA 690 0.4333 MNEAALTLPSLGTKLWERRRASMAVSSISAASLVPSPSLFSPSSLNYKAKFSLFFFHNGTNTLKLKSSKPLQSSTRVYAAPEVLHSPESVEPPPESQDDSDPTTLEVGDLRTPSTSSLSIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARSTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1247 229 PRINTS Ribosomal protein S10 family signature 132 145 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 PRINTS Ribosomal protein S10 family signature 188 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 PRINTS Ribosomal protein S10 family signature 167 182 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 MobiDBLite consensus disorder prediction 83 120 - -
Dere05g1247 229 MobiDBLite consensus disorder prediction 96 120 - -
Dere05g1247 229 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 79 229 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 Pfam Ribosomal protein S10p/S20e 134 228 IPR027486 -
Dere05g1247 229 SMART Ribosomal_S10_2 134 228 IPR027486 -
Dere05g1247 229 Hamap 30S ribosomal protein S10 [rpsJ]. 130 229 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 NCBIfam 30S ribosomal protein S10 131 228 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 SUPERFAMILY Ribosomal protein S10 132 229 IPR036838 -
Dere05g1247 229 ProSitePatterns Ribosomal protein S10 signature. 156 171 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere05g1247 229 FunFam 30S ribosomal protein S10 127 229 - -
Dere05g1247 229 Gene3D Ribosomal protein S10 domain 121 229 IPR036838 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1247 131 229 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.000 1.54e-08 50.1