Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1239 ATGGGTTTGAGAGCATTGCATTTGCGGATGAAACTGGCATGGGTGGCCAGCACACTGGCAGCCGCAGCAGCACTATCTAAACCAGGTTGCGACAACCGGTGTGGGAATGTCAGCATCCCCTTTCCCTTCGGCACAAGCGAAGGCTGCTACAGAGATCCAACTTTCCTTATAACCTGCGACACTTCGTCTGGACACCCCATCCCATATTTAAGAAATAGCAACATTCCAGTTCTCAACATCTCCATTGATCCTGCTGAGTTGCGCGTCAGTTCTGAGGTGTCTTATGATTGCTATAATTCCAACAAATCCCTCAATGGTACTAGCGAGTGCTATGCATTTCTTGTGGAGGACGTATCCTTCAATTTCTCCTCCCAAGACCTCCTAGATCTCAGGAACAAAAAACGATTTCCATTGGTTCTCGACTGGGCTGTTGACAATTACACATGCGCTGAAGCCATGAAAAAAACAAGCACCTATGCCTGCAGGGACAACGTCTGCCTAGATTCAGAAAGTGGTATTGGCTACATCTGCCAATGTAAACCTGGATTCCGAGGCAACCCTTACGTCTCTCACCCCGCTGCTGGCTGCCGAGATGTTAATGAGTGCAGCGAATCCAACAATTGCAGTATTCATGCCACATGCCACAATTTCGAAGGTAGCTTCAACTGTTCTTGTCTACCTGGATACACAGGCGATGGCTACACCTGCTCTTTGGACAACCAATCTACTTATAATTTGCGTATCCTTCAAGTAGCACTAGGTGTTAGTGGCACACTTGGATACTTGGATCCGGAGTACCTCCACACAGGTCAATTGAATGAGAAGAGTGATGTCTATAGCTTCGGGGTTGTGCTCGTGGAGCTACTCACTGGGAATAAAGCAGTTGAATTCAATAGGCCAGAAATGAGAAATTTGGCTATGTACTTTGCGTCTTCAATGAGAGAGGACCGTCTTTGGGAAATTCTTGACAGGCGAGTGTTGAACCAGAAGAAGAATGCAGAACAGCTGAAGGAAGCTGCATTTTTGGCAATGAGGTGCGTTAGAGTACAAGGAGAGGAAAGGCCGACTATGAAGGAAGTAGCAATGGAGCTAGAGGGTTTGATTGCAGTGGAAAAGCATCCTTGGGGGAAGGGTGAGGACCTGATGACAGAAGAAAGTGAATACTTACTTGGTCATGTACCTGATGGATATGGGGCTGCTTGTGCTAGTAATTCAGCTGCCTATGATAGCATACAGAAAGAGATAGCACTTGAGATTGCAAATGGGCGATGA 1272 0.4686 MGLRALHLRMKLAWVASTLAAAAALSKPGCDNRCGNVSIPFPFGTSEGCYRDPTFLITCDTSSGHPIPYLRNSNIPVLNISIDPAELRVSSEVSYDCYNSNKSLNGTSECYAFLVEDVSFNFSSQDLLDLRNKKRFPLVLDWAVDNYTCAEAMKKTSTYACRDNVCLDSESGIGYICQCKPGFRGNPYVSHPAAGCRDVNECSESNNCSIHATCHNFEGSFNCSCLPGYTGDGYTCSLDNQSTYNLRILQVALGVSGTLGYLDPEYLHTGQLNEKSDVYSFGVVLVELLTGNKAVEFNRPEMRNLAMYFASSMREDRLWEILDRRVLNQKKNAEQLKEAAFLAMRCVRVQGEERPTMKEVAMELEGLIAVEKHPWGKGEDLMTEESEYLLGHVPDGYGAACASNSAAYDSIQKEIALEIANGR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1239 423 CDD EGF_CA 198 232 - -
Dere05g1239 423 Pfam Protein tyrosine and serine/threonine kinase 259 364 IPR001245 GO:0004672|GO:0006468
Dere05g1239 423 Gene3D Laminin 188 236 - -
Dere05g1239 423 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 188 IPR045274 GO:0007166
Dere05g1239 423 SMART egf_5 201 237 IPR000742 -
Dere05g1239 423 SMART egf_5 148 197 IPR000742 -
Dere05g1239 423 ProSitePatterns Calcium-binding EGF-like domain signature. 198 223 IPR018097 GO:0005509
Dere05g1239 423 Pfam Wall-associated receptor kinase galacturonan-binding 30 90 IPR025287 GO:0030247
Dere05g1239 423 ProSiteProfiles EGF-like domain profile. 198 237 IPR000742 -
Dere05g1239 423 ProSiteProfiles Protein kinase domain profile. 1 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1239 423 Pfam EGF domain 202 236 IPR024731 -
Dere05g1239 423 ProSitePatterns EGF-like domain signature 2. 223 236 IPR000742 -
Dere05g1239 423 SMART egfca_6 198 237 IPR001881 GO:0005509
Dere05g1239 423 SUPERFAMILY EGF/Laminin 196 240 - -
Dere05g1239 423 Gene3D Transferase(Phosphotransferase) domain 1 237 380 - -
Dere05g1239 423 FunFam Fibrillin 2 193 237 - -
Dere05g1239 423 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 214 225 IPR000152 -
Dere05g1239 423 SUPERFAMILY Protein kinase-like (PK-like) 251 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1239 Dere-ChrDere05 19944017 19947058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1239 250 423 Receptor kinase-like Gene Family AT1G21240 51.412 2.94e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Dere05g1239 PK_Tyr_Ser-Thr 1.9e-09 CL0016