Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1235 ATGGCCAGCAATGTTGTAAGGGAGCCCTTACTGTCACAATTACCGGAGCCGGCAGCTCAGAAGACAAAAAGGAAGTTAAACAGGAAAAGATTTCTCCGTTGTAGAAGTGCTCCTCTTGCTGATCTTGCTCCTCCAAATAAAATTGACGAAGTCTCAATACCACGTTCGGAGTCCATATTTGGGAAGTTACATCCAAGTTTTCGAAAAGTGTCTATATACCTTGCAGGGTATTTAGGTGTTGGAGCTGTGATCTTTTATCTTGTCAGGCACCAGATCAAGGGGAAGAAAACAGATGGGGTTCTTGATGCTGTATACTTTACAATTGTCACAATGACCACGGTTGGATACGGAGACCTTGTGCCAAATAGTGACGTTACAAAACTACTTGCCTGTGCTTTTGTCTTCACAGGAATGGCACTGGTTGCTTTGATCCTAAGCAAAGCAGCAGACTACTTGGTCGAGAAACAAGAAATTTTGCTAATCAAAGCTTTCCACAGGCACCAAAAAGGTGGCCCAACTCAAATTCTAAAGGAGGTTGAGGTCAACAGGACAAGATACAAATTTTTTGTGGTCCTTTTCCTTCTTTTGGTGCTCATTGCTGCGGGGACAATTTTCCTAGTCACTGTTGAGAAATTGGAAATTGTCGATGCCTTCTATTGTGTTTGCTCTACAATTACAACCTTGGGTTATGGTGATAAAAGCTTCTCAACTGAAGCAGGAAGAATCTTTGCTCTCTTCTGGATACTGACAGGTACTATATGTTTAGCTCAGCTTTTCCTTTACATTGCTGAGCTGAACACTGAATGTAGACAAAAGAAAATAGCTAAGTGGGTTCTTACACGGAAGACAACCAATGCGGATTTGGAGGCAGCAGATCTTGATGATGATGGAAGTGTCGGGGCCGCTGAGTTTATTATCTATAAGCTCAGAGAGATGGGGAAGATTAGTCAAGAAGATATTTCACTCGTAATGCAAGAGTTTGAGGAGCTTGATGTTGATCAATCCGGTACTCTTTCAATATGTGATATAACTCTTGCTCAGGAAGCTCATCCGTCTTAA 1059 0.4202 MASNVVREPLLSQLPEPAAQKTKRKLNRKRFLRCRSAPLADLAPPNKIDEVSIPRSESIFGKLHPSFRKVSIYLAGYLGVGAVIFYLVRHQIKGKKTDGVLDAVYFTIVTMTTVGYGDLVPNSDVTKLLACAFVFTGMALVALILSKAADYLVEKQEILLIKAFHRHQKGGPTQILKEVEVNRTRYKFFVVLFLLLVLIAAGTIFLVTVEKLEIVDAFYCVCSTITTLGYGDKSFSTEAGRIFALFWILTGTICLAQLFLYIAELNTECRQKKIAKWVLTRKTTNADLEAADLDDDGSVGAAEFIIYKLREMGKISQEDISLVMQEFEELDVDQSGTLSICDITLAQEAHPS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1235 352 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Dere05g1235 352 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Dere05g1235 352 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Dere05g1235 352 Gene3D - 171 291 - -
Dere05g1235 352 Gene3D - 64 158 - -
Dere05g1235 352 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere05g1235 352 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere05g1235 352 SUPERFAMILY EF-hand 275 344 IPR011992 -
Dere05g1235 352 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 72 322 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere05g1235 352 FunFam Two-pore potassium channel 1 168 276 - -
Dere05g1235 352 SUPERFAMILY Voltage-gated potassium channels 65 166 - -
Dere05g1235 352 Pfam Ion channel 73 153 IPR013099 -
Dere05g1235 352 Pfam Ion channel 194 265 IPR013099 -
Dere05g1235 352 SUPERFAMILY Voltage-gated potassium channels 180 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1235 Dere-ChrDere05 19844250 19846072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1235 47 347 Ion Channels AT5G55630 64.901 7.85e-145 412