Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1230 ATGGGGGGGTTCAAAGAGCAGGAATTCATCTTTCGAAGCCCATATTCTAGCGTCCCCATTCCTGAGAAGGCGACGCTGCCAGAATTTGTGCTTCAGAATGCTGAGTTGTACGCAGACAAGGTGGCTTTTGTGGAGGTTGGGAGTGGAAAAACAATTACGCACGGCCAGGTGGTGAGAGACACAGAGAGGTTTTCCAAGGCCTTGCGTTCTCTGGGTGTGAGAAAAGGGAATGTTGTGATCGTGGTGCTGCCCAATGTTGCGGAGTATGGCATTATCGCTCTGGGGATAATGGCTGCCGGTGGAGTGTTTTCCGGTGCCAATCCCGCCGCTCATGCTTCGGAAATCAAGAAACAAGTACAGTCTGCTGAAGCCAAGCTGATTGTCACAAATGGACTCAACTATGAAAAGGTGAAAGGTCTAGAGCTACCTGTCATAGTTTTAGATGATGAGCCTATTGACGATGCCATAAATTGGAATAAACTACTTGAAGCAGCAGACCGAGCTGGCGAAAGTCTGACAAAGGAAGTTGTTCAGCAGAATGACCTGTGTGCCATGCCTTTTTCATCAGGTACCACAGGAATGTCCAAGGGTGTGATGCTGACTCACAGAAACCTGGTAGCCAATCTTTGCTCGACACTCTTCGGCGTGGAGCCTGAAATGGTTGGTCAGGTCACCACACTAGGCCTAATACCCTTCTTCCACATCTATGGCATCACTGGAATATGCTGTGCCACTCTTAGAAACAAAGGGAAAGTGGTTGTGATGGGAAGGTTCGAGTTAAGAACATTTCTCAATGCGTTGATCGCTCATGAGGTCACATTTGCACCCATTGTGCCCCCAATTATTCTCAACTTGGTAAAAAATCCCATTGTAGATGAGTTTGATCTCACCAAGCTCAAACTCCAGGCCATACTGACTGCAGCCGCACCCCTGGCGCCAGAAGTGCTCACAGCCTTCGAAAATAAGTTCCCTGGCGTTGTTGTCCAAGAAGCATATGGGCTAACTGAACATAGTTGCATTACACTCACCCACGTACAAAAAGGATGTCCAAAAAGAAACTCAGTGGGGTTCATTCTCCCAAATTTGGAAGTCAAGTTTATTGATCCTGACACCGGCAAATCCCTCCCGAGGAACACACCTGGCGAGCTTTGTGTGAGAAGCCAATGCGTAATGCAAGGTTACTACAAACAGGTGGCTGAGACAGCACAGACTATTGATAAGAATGGTTGGCTTCACACTGGTGACATAGGGTTCATTGATGACGAAAACAATGTATTTATCGTTGATCGCATCAAGGAGTTAATTAAATACAAAGGATTCCAAGTTGCTCCTGCTGAGCTGGAGGCCATTCTTCTATCCCATTCCTCTGTTGAAGATGCAGCTGTTGTGCCATTACCAGATGAAGAGGCAGGGGAGATCCCAGGTGCAAGTGTGGTGATGAGCCGTGGAGCAAAAGAGAGTGAAGAGGACATCATAAACTTTGTTGCCTCAAACGTTGCACATTACAAGAAGGTGAGAGTGGTGCACTTTGTGGAAGCCATCCCAAAATCACCTTCTGGCAAAATTATGAGGAGGCTCGTCAAAGAGAGAATGGTGGAGAAGATTACTAAATCAAACAGTGCCTAA 1626 0.4705 MGGFKEQEFIFRSPYSSVPIPEKATLPEFVLQNAELYADKVAFVEVGSGKTITHGQVVRDTERFSKALRSLGVRKGNVVIVVLPNVAEYGIIALGIMAAGGVFSGANPAAHASEIKKQVQSAEAKLIVTNGLNYEKVKGLELPVIVLDDEPIDDAINWNKLLEAADRAGESLTKEVVQQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVEPEMVGQVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFELRTFLNALIAHEVTFAPIVPPIILNLVKNPIVDEFDLTKLKLQAILTAAAPLAPEVLTAFENKFPGVVVQEAYGLTEHSCITLTHVQKGCPKRNSVGFILPNLEVKFIDPDTGKSLPRNTPGELCVRSQCVMQGYYKQVAETAQTIDKNGWLHTGDIGFIDDENNVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPGASVVMSRGAKESEEDIINFVASNVAHYKKVRVVHFVEAIPKSPSGKIMRRLVKERMVEKITKSNSA 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1230 541 SUPERFAMILY Acetyl-CoA synthetase-like 7 534 - -
Dere05g1230 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 432 - -
Dere05g1230 541 Pfam AMP-binding enzyme 32 437 IPR000873 -
Dere05g1230 541 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Dere05g1230 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 529 - -
Dere05g1230 541 CDD 4CL 20 525 - -
Dere05g1230 541 Gene3D - 8 432 IPR042099 -
Dere05g1230 541 FunFam 4-coumarate--CoA ligase 2 433 534 - -
Dere05g1230 541 Pfam AMP-binding enzyme C-terminal domain 446 521 IPR025110 -
Dere05g1230 541 Gene3D - 433 537 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1230 Dere-ChrDere05 19738790 19742718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1230 5 532 Monolignol Biosynthesis Gene Families AT1G62940 73.684 0.0 795