Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1228 ATGCTAATGCTCTTCTTTCTCTTGGGCTTCTTGGACCCAAAAGTGCTCGCACAAAACCTCACGTTCGAATTCCCTTCCTTCACATCTCTCAGGAACATAACTCTCGTCGGCGATGCTTATCTCCGGAACGGCGTCGTCGGCCTCACCAGGTCATCCGACGTGCCTACTTCCAGCGCTGGAGCCATGATATACAACAACCCCATCTCTCTCTTCGACCCACAATGGAACACCTCTTCATTTGCCACAACATTCGCTTTCTCCATCACCAACAACCTCAACAATCCCACTTCCTTCGTTGGTGATGCCTTGGCTTTCTTTCTATCTCCCATTAACCACACTCTTTTGAGCTCCGGCGAGTATCTGGGTCTCCTCAATTCCTCCCAGTCGACCCCATCTAATTCCGTCTCCGTCAAATTCGACCCGAATGAGAATCGCGTCGGTTTGTTTGTTAACGGCGTCGCTTCAATCAACACCACTGGGGATCCCACCTTGCAGGGGATTGATCTCAAGGGTGGTGAATTGATTATGTCTTGGATCGAATATGAGAGTGACAAGAGGAAGTTCCAAGTGTTCTTGGGATATAATTCGAGTTTTAACTTCAAGCCTGCGAAGCCGATTCTGAGCTTTGATGATTTTGACCTTTCTGAGCATTTCAAGGAGAAAGTGTATGTGGGGTTTTCTTCTTCCACTGAGGGAAGCACTGTGCTTCATGAGGTTGAGAATTGGAGATTTCAGAGTGATAGGTTTCTTCCTGCAACAACACCAAAGTTTCATGCTCACAACGTTTCGGATAGCTTAGTGAGTGTAACAGTAGACATGCCTGACAAGTCCAAAAATTCCAGCAAGAAGCATGACAAAAGGCTTGGAGTAGGCATTGCCATTGCTAGTCCAGCTTTTTTCTGCGTAGTCCTGTTAATTTTGGGCTATATTTCTGCTCGGAAATGGAGGAATAGCAGAGAACGGAAGAGAGTGAAAACTGAGCTTATGGGGTGTCCAAAGGAATTTAGTTACAAAGAAGTGAAATCAGCTACAAAGGGGTTTCACCCAAGTAGAATCATAGGCCAAGGATCATTTGGGACAGTTTACAAAGCCTTTTTTGTATCTTCAGGAAACATTGCTGCAGTGAAAAGGTCTAGACGCTCCCATGAAGGCAAAACAGAATTCCTAGCTGAACTGTCTATTATAGCTGGTTTGAGGCACAAGAATCTGGTTCAGCTCCAAGGTTGGTGTGTTGAGAAGGGGGAATTGCTGCTTGTGTATGACTTCATGCCCAATGGGAGCTTAGATGAGATGCTTTACAGAGAACCTGAAGATTGCCAAAACTTGTTGAACTGGTCTCACAGACTCAATATTGCCGTTGGCTTGGCTTCTGTCCTGACTTACCTCCACCAAGAATGTGAGAAGAGAATCATACACAGAGACATTAAAACTGGAAATGTATTGCTAGATGGAAATTACAACCCAAGGTTGGGGGATTTTGGATTGGCAAAGCTGCTGGATCATGATAGAAGCCCAGTTTCAACATTAACAGCAGGAACAATGGGATATCTTGCACCTGAGTATCTGCAGTATGGGATGGCTACTGAGAAAACTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGAAGTGGCATGTGGGAGGAGGCCAATCGAAAGAGAGGGCCAAAACATGGTCAATTTGGTTGATTGGGTTTGGGGGCTTCACTCTCAAGGGAAGATAATTGAAGCAGCTGATAAAAGGTTGAACGGAGAATTCAGAGAGGAGGAGATGAGGAAACTGCTGCTCTTGGGGTTGAGCTGTGCAAATCCAAATAGTGCCGCAAGGCCATCCCTGACTAGAGTTTTACAGATTCTAAGCAACAAAGAAGCCGCATCTACACTTGTCGTGCCTAAGGTAAAACCAAGCCTAACCTTCTCTTGTGGCTTGCCCTTGACTCTCGATGAGATTGTTTCAGATAGTGAGGAGTTCAACACCAAGCAATCTATGTGTGAGATCAGAATTGACTGA 2007 0.4554 MLMLFFLLGFLDPKVLAQNLTFEFPSFTSLRNITLVGDAYLRNGVVGLTRSSDVPTSSAGAMIYNNPISLFDPQWNTSSFATTFAFSITNNLNNPTSFVGDALAFFLSPINHTLLSSGEYLGLLNSSQSTPSNSVSVKFDPNENRVGLFVNGVASINTTGDPTLQGIDLKGGELIMSWIEYESDKRKFQVFLGYNSSFNFKPAKPILSFDDFDLSEHFKEKVYVGFSSSTEGSTVLHEVENWRFQSDRFLPATTPKFHAHNVSDSLVSVTVDMPDKSKNSSKKHDKRLGVGIAIASPAFFCVVLLILGYISARKWRNSRERKRVKTELMGCPKEFSYKEVKSATKGFHPSRIIGQGSFGTVYKAFFVSSGNIAAVKRSRRSHEGKTEFLAELSIIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDEMLYREPEDCQNLLNWSHRLNIAVGLASVLTYLHQECEKRIIHRDIKTGNVLLDGNYNPRLGDFGLAKLLDHDRSPVSTLTAGTMGYLAPEYLQYGMATEKTDVFSYGVVVLEVACGRRPIEREGQNMVNLVDWVWGLHSQGKIIEAADKRLNGEFREEEMRKLLLLGLSCANPNSAARPSLTRVLQILSNKEAASTLVVPKVKPSLTFSCGLPLTLDEIVSDSEEFNTKQSMCEIRID 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1228 668 Gene3D - 17 247 - -
Dere05g1228 668 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
Dere05g1228 668 Pfam Protein kinase domain 348 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1228 668 PANTHER - 46 622 - -
Dere05g1228 668 CDD lectin_legume_LecRK_Arcelin_ConA 20 247 IPR001220 GO:0030246
Dere05g1228 668 FunFam L-type lectin-domain containing receptor kinase VIII.1 311 422 - -
Dere05g1228 668 ProSiteProfiles Protein kinase domain profile. 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1228 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 254 IPR013320 -
Dere05g1228 668 Pfam Legume lectin domain 20 249 IPR001220 GO:0030246
Dere05g1228 668 SMART serkin_6 347 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1228 668 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Dere05g1228 668 FunFam L-type lectin-domain containing receptor kinase VIII.1 423 638 - -
Dere05g1228 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Dere05g1228 668 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Dere05g1228 668 CDD STKc_IRAK 353 618 - -
Dere05g1228 668 Gene3D Phosphorylase Kinase; domain 1 309 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1228 Dere-ChrDere05 19713539 19715545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1228 15 655 Receptor kinase-like Gene Family AT5G55830 58.447 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Dere05g1228 Pkinase 3.5e-48 CL0016