Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1221 ATGAATTCAGGGTCCATGATTTCATTTGCTACAAACTCCCCACCAAGAGAAGATAGAATGGCAAGTGCCAGAACCAGGTCTTCTAATGCTTCAAGGCCTTCCTTTTTGATTCGGATGGCCATGAGAATTTCTAGAGCAAGATGGTTCACCTTCTTAAGGAGAGTTTTCCATTATCAAAATGGATCAAGGTCTGATCTCGGGTCCAATCCTTTCAATTCTGGCACCTGGATGATGCTGGAATTCACTGCCTTAATGGTCCAGATAACCATCACAACCATCACTTTGGCCATTTCAAAGAGAGAGAAACCTGTTTGGCCAATGAGGACATGGATATCTGGTTATGATATTGGCTGTATGCTTAATCTACTGCTGCTTTATGGGCGCTATCGTCAGCTTTATCTGTCCCAAGGAGATGCTCTTAGCCTCTCTGATATGGAACAACAGAGAGGCAATGAAGAAACCAGGTGTTCACATCTGATGAATAAATGCCGTACTTCACTTGAGCTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGGTTTGGGTCCTTCCAAAGAGCTCCAAAACTCCACGTGCTCTGCATCTCCCTGCTTGCTTGGAATGCCATCACCTACTCCTTCCCTTTCCTTCTCTTCCTCCTGCTATGCTGCTGTGTGCCTCTGATCAGCAGCCTCCTTGGTTACAACATGAGCGTGGGATCTTCTGACAAGGGTGCTTCTGATGATCAAATCTCAGGGCTTCCAAGTTGGAGATACAAGCAAGTTTGTAAGAAGTTGGAGCATGGCAATGATTCTGAAGCCAGTGAAGGACTGGTCGATGAAGATCCTGAATGTTGCATATGCTTAGCCAAATACAAAGACAGGGAAGAAGTTAGGCAATTGCCATGCTCTCATATGTTCCACAAAAAATGTGTGGATCAATGGCTCAGGATCATATCTTGCTGCCCTCTATGTAAACAGGGATTAGAGAGGTAG 993 0.4481 MNSGSMISFATNSPPREDRMASARTRSSNASRPSFLIRMAMRISRARWFTFLRRVFHYQNGSRSDLGSNPFNSGTWMMLEFTALMVQITITTITLAISKREKPVWPMRTWISGYDIGCMLNLLLLYGRYRQLYLSQGDALSLSDMEQQRGNEETRCSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPKLHVLCISLLAWNAITYSFPFLLFLLLCCCVPLISSLLGYNMSVGSSDKGASDDQISGLPSWRYKQVCKKLEHGNDSEASEGLVDEDPECCICLAKYKDREEVRQLPCSHMFHKKCVDQWLRIISCCPLCKQGLER 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1221 330 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 11 327 - -
Dere05g1221 330 Pfam Ring finger domain 283 325 IPR001841 -
Dere05g1221 330 MobiDBLite consensus disorder prediction 1 27 - -
Dere05g1221 330 SMART ring_2 284 324 IPR001841 -
Dere05g1221 330 SUPERFAMILY RING/U-box 275 328 - -
Dere05g1221 330 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Dere05g1221 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 329 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1221 Dere-ChrDere05 19599957 19603085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1221 35 328 C3H Transcription Factor Family AT4G26580 72.297 8.20e-154 433