Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1214 ATGGATGCCTTCAGCCATCGTGTAGACTTGGTTGACCCCACATTTCATTGGTCGGTGGAGCAAGTCGACGTTCCTCCTCTCACAGAGGGCCAACCACGTAATTTCCGCAGAAAATCAGGGTTATTTTACCAAACAAGGCTGCCATACCCTCCACACTATATATACAGTACCACCACTGTCTCTCATAAAGCCATCGTATCTATTATCGTCTCACTGCTTTCTGCCTGTAATCGAATTGCCTTTTGCCTTCGCTCCTCTATCTCTCATTCTATTTCTGTACACTGCCTCTCTCTCTCTTACTCTCTTTCTGTGCGTCTTTTTACTTCTCTTTTCCCACTCAATTCTGAAGATATTTCAGAAGCATCGTGGACTACTGTTCTCGAAGGATTATCACTCACCATATGTCATATCATCAAGATGGCTGCAAAGAAACGGTTGTTTGATGCAATTGTTGGGAACGTGGTGCCCAGGACTTATGATGATTCATTGTTAATCCCGTCAGCCAATGGATCATTAAAGCACAGAAAAAACATTTCTTTTGGTTGGGAACTCGAGTGTTTTAGTAGTTATAGGTCCTTGCCAATGGATGCTAAATCTGTCGTAGATTTAATAGAATCATCCTCTGGGGTTCATTTTTCCGGATTTCACATGGACGCATTAGAGAAAATAAATGCTGGAACAGAGCCACCAACAACTTCAGCAACTGACCACATGTATAATCAACCTTTTGTCATAGGTGTTGCTGGTGGAGCAGCAGCTGGGAAGACTACAGTTTGTAATATGATTATTCAGCAACTTCATGACCAACGAGTTGTAGTTGTTAATCAGGATTCTTTTTATCATAATTTGACAGAGGAGGAACTTACTAGAGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTAGGAGTTATGGATAAATTGATGCATGGCCAAGCTGTAGATATTCCAAACTATGACTTCAAGAGTTACAAAAGTGATGCATTTCCAGCTAGACGGGTAAACCCTTCTGATGTAATAATTTTGGAAGGAATTCTTGTCTTCCATGACCCACGTGTTAGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGCTCGACTGGCAAGGAGGATTAAGCGTGATACTGTTGAGAAGGCTCGGGACATCGGCACTATTCTTGATCAGTATTCTAAATTTGTGAAGCCTGCTTTTGATGACTTTATTCTTCCAACGAAGAAGTATGCTGATATCATTATACCACGTGGAGGAGACAATCATGTGGCCATTGATTTGATTGTACAACATATCCGCACAAAGCTTGGTCAGCACGATTTATGTAAAATATATTCTAACCTATATGTTATACAATCAACCTTTCAGATACGAGGTATGCATACCCTGATACGTGATTCCAAGATAACAAAGCATGACTTTGTATTTTATGCTGACCGTTTGATTCGTCTGGTTGTTGAACATGGCCTGGGACATCTGCCATTTACAGAAAAGCAAGTAATCACTCCAACTGGGTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGAGAGAGTATGGAGAATGCTTTACGAGCGTGCTGTAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTGATATACGAAAAGTTGCCTAATGATATCTCAGATAGGCACGTGTTACTGTTGGATCCCATCCTAGGCACAGGAAATTCAGCTGTTCAGGCAATTTCTTTACTTATAAGAAAAGGTGTACCAGAGTCGAACATTATATTTCTTAATCTCATATCCGCACCCCAAGGTGTGCATGTTGTCTGCAAAAGCTTTCCCAGAATAAAAATTGTGACATCTGAGATTGATATCGGTCTGAATATTGACTTTCGTGTCATACCTGGGATGGGTGAGTTTGGGGACCGGTATTTTGGCACAGATGATGATGATCAGCAGGTGGTGGCTCCTTCACAGTAG 2022 0.412 MDAFSHRVDLVDPTFHWSVEQVDVPPLTEGQPRNFRRKSGLFYQTRLPYPPHYIYSTTTVSHKAIVSIIVSLLSACNRIAFCLRSSISHSISVHCLSLSYSLSVRLFTSLFPLNSEDISEASWTTVLEGLSLTICHIIKMAAKKRLFDAIVGNVVPRTYDDSLLIPSANGSLKHRKNISFGWELECFSSYRSLPMDAKSVVDLIESSSGVHFSGFHMDALEKINAGTEPPTTSATDHMYNQPFVIGVAGGAAAGKTTVCNMIIQQLHDQRVVVVNQDSFYHNLTEEELTRVQDYNFDHPDAFDTEQLLGVMDKLMHGQAVDIPNYDFKSYKSDAFPARRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADARLARRIKRDTVEKARDIGTILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDSKITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNIDFRVIPGMGEFGDRYFGTDDDDQQVVAPSQ 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1214 673 CDD UMPK 255 442 IPR000764 -
Dere05g1214 673 NCBIfam uridine kinase 241 442 IPR000764 -
Dere05g1214 673 SUPERFAMILY PRTase-like 445 662 IPR029057 -
Dere05g1214 673 PRINTS Uridine kinase signature 272 283 - -
Dere05g1214 673 PRINTS Uridine kinase signature 317 332 - -
Dere05g1214 673 PRINTS Uridine kinase signature 374 384 - -
Dere05g1214 673 PRINTS Uridine kinase signature 242 259 - -
Dere05g1214 673 PRINTS Uridine kinase signature 388 399 - -
Dere05g1214 673 PRINTS Uridine kinase signature 410 423 - -
Dere05g1214 673 FunFam Uridine kinase 239 445 - -
Dere05g1214 673 Gene3D - 239 445 IPR027417 -
Dere05g1214 673 Pfam Uracil phosphoribosyltransferase 460 661 - -
Dere05g1214 673 Gene3D - 446 661 IPR029057 -
Dere05g1214 673 FunFam Uridine kinase 446 661 - -
Dere05g1214 673 PANTHER URIDINE KINASE 234 571 - -
Dere05g1214 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 435 IPR027417 -
Dere05g1214 673 CDD PRTases_typeI 519 634 IPR000836 -
Dere05g1214 673 Pfam Phosphoribulokinase / Uridine kinase family 244 430 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1214 Dere-ChrDere05 19476344 19485451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1214 195 664 PRT Gene Family AT4G26510 83.864 0.0 814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1748 04 19936011 19947221 Dere05g1214 05 19476344 19485451 CCT
Dere05g1214 05 19476344 19485451 Dere05g1214 05 19476344 19485451 ECH