Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1209 ATGTTCACACATAATCTTAAGGAGATTGAGCTATCTGCCATAGACATCTCAGTCATGCTGGTCCTTCTGCATGCAGCTGATAAATATGACATATCTGACTTGAGAGAAGCATGCCATGAGAGTCAGTTAGAAGATATTGATTCAAATAATGTACTTGAAGGCCTCCAAAATGCATCTTTATACCAATTGCCAAAATTGAAAATGAGCTGTACGAGATACCTTGTGAAATTCGGTAAATTATTTGACGTTCAGGATGATTTCAATGCCTTCTTGCAATGCACAGACAGGGATCTGATTGCTGAAATCTTCCATGAAGTTCTTAGTTCCTGGAATGAAATATGGATGCACAACTGCACATACCTGTGCAATAAAATAAAAGGGAAAACACTTAGCGGCAAGTTGATTGATTTTGCAGAATGTCGACATTTTCCTATGGCCACTAAACAGAATGTCGTCATTGGCAATCAAGGAAAGTGTTCAAGTTTTCTGGCAGACGTAACAGGAGTGAATCCTACGGAAGAAGAAGGAGAAGAAGACAATCTGGGAAAGCCTGGAAAGTTCTTGTTAGATTGCATCTATGAAATCACTGCTGCACTTGTTTTTTCTGATAGGATGAGCGATTCCGTGCACAGAGTGGAAACCACGTCCCGTCTCGCCCAATGGAGGATCGACAACTTCACTTCCTGCAGTTACCGCAAATCCGATCCTTTCAAGATCGGCGTGTGGAATTGGCATTTGGCAGTAGAGAAGAACCGGGTTTTGTTTATTAGATTATACCCGGAGATATGCAGTTTTTCGAGAATGAATCCCCCAATTGTATCTTTCATCATAAGGGTTCTTAGTTCTGCTGGAGATCGCAAGGCCTTGACTCATCCAGAAATAAAAGACAAACTGCTCAACAACAACGAAGACTTTGTTTGGGCAATTGAGGTCCCTCCAACTGGAAAATTCATTATTGACATTGAGTTCTTAGATTTGAAGACGGCATCCCAAGAGGGTGGAGAACCTTGCTCCATCTGGGAACACAAATTTATGCAGCAAAGATCAAATGCAACAGCCCTTCAATCTCTGGGTCGAATGCTAGCAGAACGTATCCACACAGACATCATGATCCATGCTGCAGATGGAAGTATCGAAGCACATCGAGCTGTTCTTGCTGCTCGATCACCTGTTTTCTGCAGCATGTTCTCACATAATCTTAAGGAGAAGGAGCTATCTTCCGTAGACATCTCAGACATGTCAGTTGAAGCTTGCCAAGCTCTTCTCAATTATCTTTATGGGAACATCAACCTTGAAGAATTTCAGACACACAGGCTGGTCCTTCTTCATGCAGCTGATAAGTATGACATATCTGACCTTAAAGAGGCATGCCATGAGAGTCTGTTAGAAGATATTGATTCAAATAATGTACTTGAAAGACTCCAAAATGCATCTCTATATCAATTGCCAAAATTGAAGATGAGCTGGATCTCATTGCTGAAATCTTCCATGAAGTTCTTAGTTTCTGGAAAGGATTATGAAGATCTTTCTGCTTCAAATGAGAGGATCAAAAGGCAAAGGTCATTCTTATTTGATCGCATACATCAACGACACAGAATTCGAATATGGATGCACAACTGCACATACCAATGCAATAGAAGAGAAAACACTTGGCAGCATCATAGCGCCATTACTGATTCTAAATCAGTTTTCATTTTCATTAGCAATTGGAACGGTTGCATAATGCAATCCAACGAGGCATCCATGGAAGTTGGCGGTGTCCCATCTGAACCAAAACTTTTGCCACCAAAGCCAAAGTTTGAGCCTTTGAAAGCTCATGAAATGTCTGATGGTCGCATTCAATTCCGGAAGGTGTCTGTTCCACAACATCGATATACCCCTCTCAAGAAAGCATGGATGGATATCTATACTCCAGTGTACGAGCAAATGAAAATTGACATCCGTATGAATCTTAAGGCTCGAAAGGTTGAGTTGAAGACAAGACCAGATACACCTGATATCAGCAACCTCCAAAAATGTGCTGATTTCGTCCATGCTTTCATGATGGGTTTTGATGTCATAGATGCAATTGCCCTTCTGCGTTTGGATGAGCTCTATGTTGAGTCTTTCGAGATCAAGGATGTTAAAACACTAAGAGGTGACCACTTGTCTCGTGCTATAGGAAGATTATCAGGTAAAGGTGGTAAAACGAAGTTTGCAATTGAGAATGCCACGAAGACAAGGATTGTGATTGCTGATACCAAAATTCACATACTAGGATCATTTGCCAACATTAAGGTTGCTAGGGATTCTCTTTGTAGCCTAATCTTGGGGTCACCAGCAGGAAAGGTATATTCTAAACTAAGAGCAGTTACTGCTAGACTGGCAGAAAGGTTTTGA 2379 0.4119 MFTHNLKEIELSAIDISVMLVLLHAADKYDISDLREACHESQLEDIDSNNVLEGLQNASLYQLPKLKMSCTRYLVKFGKLFDVQDDFNAFLQCTDRDLIAEIFHEVLSSWNEIWMHNCTYLCNKIKGKTLSGKLIDFAECRHFPMATKQNVVIGNQGKCSSFLADVTGVNPTEEEGEEDNLGKPGKFLLDCIYEITAALVFSDRMSDSVHRVETTSRLAQWRIDNFTSCSYRKSDPFKIGVWNWHLAVEKNRVLFIRLYPEICSFSRMNPPIVSFIIRVLSSAGDRKALTHPEIKDKLLNNNEDFVWAIEVPPTGKFIIDIEFLDLKTASQEGGEPCSIWEHKFMQQRSNATALQSLGRMLAERIHTDIMIHAADGSIEAHRAVLAARSPVFCSMFSHNLKEKELSSVDISDMSVEACQALLNYLYGNINLEEFQTHRLVLLHAADKYDISDLKEACHESLLEDIDSNNVLERLQNASLYQLPKLKMSWISLLKSSMKFLVSGKDYEDLSASNERIKRQRSFLFDRIHQRHRIRIWMHNCTYQCNRRENTWQHHSAITDSKSVFIFISNWNGCIMQSNEASMEVGGVPSEPKLLPPKPKFEPLKAHEMSDGRIQFRKVSVPQHRYTPLKKAWMDIYTPVYEQMKIDIRMNLKARKVELKTRPDTPDISNLQKCADFVHAFMMGFDVIDAIALLRLDELYVESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENATKTRIVIADTKIHILGSFANIKVARDSLCSLILGSPAGKVYSKLRAVTARLAERF 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1209 792 PANTHER OS08G0495500 PROTEIN-RELATED 210 498 IPR044714 -
Dere05g1209 792 Gene3D K Homology domain, type 1 696 792 IPR036612 GO:0003723
Dere05g1209 792 FunFam RNA-binding protein PNO1 696 792 - -
Dere05g1209 792 SMART kh_6 697 770 IPR004087 GO:0003676
Dere05g1209 792 ProSiteProfiles BTB domain profile. 367 426 IPR000210 GO:0005515
Dere05g1209 792 Gene3D Potassium Channel Kv1.1; Chain A 1 81 IPR011333 -
Dere05g1209 792 SMART BTB_4 367 465 IPR000210 GO:0005515
Dere05g1209 792 SUPERFAMILY POZ domain 351 463 IPR011333 -
Dere05g1209 792 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 697 791 IPR036612 GO:0003723
Dere05g1209 792 CDD KH-I_PNO1_rpt2 694 789 - -
Dere05g1209 792 Pfam BTB/POZ domain 362 463 IPR000210 GO:0005515
Dere05g1209 792 Gene3D Potassium Channel Kv1.1; Chain A 340 494 IPR011333 -
Dere05g1209 792 CDD BTB_POZ_ZBTB_KLHL-like 366 448 - -
Dere05g1209 792 CDD KH-I_PNO1_rpt1 613 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1209 Dere-ChrDere05 19408900 19422054 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere05g1209 BTB 3.5e-22 CL0033