Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1193 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTTCATGAGCCAAATTATCGGGTTGGTAGTTCATATGACGAAAGGAGGTACGTAGATGAAAGGTACTCAAGGGATAATATATACCAGAGAAATGCTTTCCACCGTGATGTTTTGGATAGAGAGACATATCCGCCATCAGGACCTGCTGTTGGCCATTGGAGTGATTCCAAACGGAGAGGTTACGAAGAAGACTATCCTCTGGACAGGGAATCTAGACGTCTTCAGAGGCCTTATTATGATTCATATCATCAGATTGATGCTTTTAGAGATAGGGAAGTTGACATGTATCCAGAATTTGATAAGTTTCGGGATGGCTATGCCAGCATTGAAAACTATAGTGATCGAGGATATGATAAACCTGGCAGGTTTGGGGGACATGATCGTGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGTATCCCATCATCATAGGGAGGATAGCCATGAGAGGGATATTGATCATGGTCGGCATAGTCATGATTCTGATTATGGAAGAGGTAGAAGAGATAGTAACTGGAGGCGACGTGAATCCCGTGAGCGGGAACATGATAAAAGATATCCAAGTCGAGAAAGAGATTTGAGTCCACGTAGGAGGCATGATCGGTCCCATTCCCGTTCTCGCTCCCGATCCCGTTCCCATTCTCATTCACGTTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCTCGTGGTCGAAGCCATGGTCGAAGTTATCGAGATGACAGCTATGCTGACAGTCGGTATGAGAGGAGTGAAAAGCGAAGGGATCGTGAAGAGAAACGGCGTGAGCATTATTCAGTGGCACCATCTGCGACTGTTGTTGTGAAAGGTCTTTCACAGAATGCGAATGAAGAAGATTTATACCAGATTCTTGCGGAATGGGGGCCACTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGACAAACTTGGAGATGATGGTCTTGTTGTGGATGGTAGAAAGCTTTTCTTCGAATATAGTAGTAAGCCAACCGGAGGTCCAGGTGGACCTTTTGGCCAAGAGGGATCTATGAAATCAAGTCATAATCATAAAAGCATTACAGTTCCATCCGATTGGATGTGCACCATATGTGGCTACATCAATTTTGCCCGGCGAACGTCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACATTATCAAATTCGACAGCCTTAGGAAAGAAAGGATTAGAAGCAGGTCCAACACATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAGTTCTCAAAACATGCTCCAATTAAGGATCTACGTCTTGTAAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCTTTTGTACATTTTTATTCGGTGGAGGATGCGACCAAAGCTCTTGAAGCAACCAATGGAACAACCCTTGAGAAGAATGGACAGATCCTTAGAGTAGCATATGCAAAAAGTATCCTTGGCCCTGGATCTGGAACATCTGGACCTTCCCAGTCAAGCAGCTTGGCAGCTGCTGCTATTGAGGCTGCGACATTCGCTCAACAGTATGATTCTGCTGGATGGGCGCCCAAGGAATACAATCCAGATGACAGACAATCTACTGGTCAAGATCAAACTGGCACAGAAGGCAGGTCTCAGAAGGATGCACTGGCTCCACAATCAGGCTTCGTTTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGCCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGATCACCAAACTCAGCAATACGTCCCTTGCACTGATCAAACTGAGAATAAAGCACCTAATAATCAGTCTGAACTTTCCAAGGCATCTGATGGTTCAAGCAGTAAAAAAGTGGTTATTTCTGCACCTGCTACTACTATTACATCTGTTGAGAAGCCGGCGTCATTGGCAGATGCAGTCCAGGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAGAGAAAAAGAAAAATTAAAGGAGATAAAGCTTGCTTCAAAAAGTAGTATTCTGGCTAACAAGAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGCCAGGCTACTCGTGTAGCTCTGGATGACAATCACCAATCTGTATCAGTTGATGATAGATCTTCTTCTGGATATTCCACAAAGAGCAAGTTCAAAGCTGAGATTACAGCTGCAAGGGAGAGTAATGCATCCGCTTCAGGTATTCAAACTGCCCTTGCTACTCAGGCTGTTGCATCAGATTCTCAGGTCCAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACCGTGATGGGAGTTATAAGGGGCTCCGGAAGAGGGATCATCAAATCAGATACTTCTTACTCAGGACCTACAGCTCCTGCTGCATGTACCTCAGGCTCATCTTCAACAAATATAGATGCACCAACAGCTGCGACTCCCTTTAGAACAGATGTATCTGCCCTGGGCTCATATACACCACCTGTCGCTGGTGGAAGTGGCAGAAGACGATTTTCAGAAATGCCTCATTCTGCTTCAACTCCCAAGGAACAACCTCAATCTACCTACAGGGACCGCGCTGCTGAGAGGAGAAGTTTGTATGGCTCATCATTGTCAGTTGGGGATGATTTGGCTGACCTTGAAACTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCTATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTGATACCTACGAGGTCATTACAGCTGACAAAGCAATTGATGAGAACAATGTTGGAAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGACTAGGTAAGGATGGAAGTGGAATGACAGAGCCTGTCCAGGCACAAGCCACAGAAAGTCGAGCAGGACTTGGAAGTCAGCAGAAGAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGAGATAGTTATAAGACGCTTATTCATAAGAAGGCACTTGCCAGGTTTTGGGAAATGTCATAG 3207 0.4556 MDPARYGLHQGWDNNSALEGYGAVHEPNYRVGSSYDERRYVDERYSRDNIYQRNAFHRDVLDRETYPPSGPAVGHWSDSKRRGYEEDYPLDRESRRLQRPYYDSYHQIDAFRDREVDMYPEFDKFRDGYASIENYSDRGYDKPGRFGGHDRDDYAYDDYGYRSRVSHHHREDSHERDIDHGRHSHDSDYGRGRRDSNWRRRESREREHDKRYPSRERDLSPRRRHDRSHSRSRSRSRSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYRDDSYADSRYERSEKRRDREEKRREHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGGPFGQEGSMKSSHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNSTALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDSAGWAPKEYNPDDRQSTGQDQTGTEGRSQKDALAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYVPCTDQTENKAPNNQSELSKASDGSSSKKVVISAPATTITSVEKPASLADAVQAAATAAIAAEKREKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALDDNHQSVSVDDRSSSGYSTKSKFKAEITAARESNASASGIQTALATQAVASDSQVQPRPVSNSLGGTVMGVIRGSGRGIIKSDTSYSGPTAPAACTSGSSSTNIDAPTAATPFRTDVSALGSYTPPVAGGSGRRRFSEMPHSASTPKEQPQSTYRDRAAERRSLYGSSLSVGDDLADLETGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQATESRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFWEMS 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1193 1068 MobiDBLite consensus disorder prediction 165 225 - -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 62 91 - -
Dere05g1193 1068 CDD RRM1_RRM2_RBM5_like 461 541 - -
Dere05g1193 1068 SUPERFAMILY RNA-binding domain, RBD 461 551 IPR035979 GO:0003676
Dere05g1193 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 382 IPR000504 GO:0003723
Dere05g1193 1068 MobiDBLite consensus disorder prediction 245 296 - -
Dere05g1193 1068 SMART rrm1_1 303 378 IPR000504 GO:0003723
Dere05g1193 1068 SMART rrm1_1 464 539 IPR000504 GO:0003723
Dere05g1193 1068 MobiDBLite consensus disorder prediction 578 609 - -
Dere05g1193 1068 ProSiteProfiles Zinc finger RanBP2 type profile. 408 437 IPR001876 -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 848 875 - -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 887 965 - -
Dere05g1193 1068 CDD OCRE_SUA_like 609 660 IPR035623 -
Dere05g1193 1068 Pfam OCRE domain 611 659 IPR041591 -
Dere05g1193 1068 Gene3D - 405 438 - -
Dere05g1193 1068 Gene3D - 448 609 IPR012677 -
Dere05g1193 1068 Gene3D - 266 404 IPR012677 -
Dere05g1193 1068 ProSiteProfiles G-patch domain profile. 992 1038 IPR000467 GO:0003676
Dere05g1193 1068 SUPERFAMILY Ran binding protein zinc finger-like 402 438 IPR036443 -
Dere05g1193 1068 SMART G-patch_5 990 1036 IPR000467 GO:0003676
Dere05g1193 1068 MobiDBLite consensus disorder prediction 1011 1041 - -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 1020 1041 - -
Dere05g1193 1068 Pfam G-patch domain 993 1034 IPR000467 GO:0003676
Dere05g1193 1068 MobiDBLite consensus disorder prediction 590 606 - -
Dere05g1193 1068 SUPERFAMILY RNA-binding domain, RBD 223 380 IPR035979 GO:0003676
Dere05g1193 1068 SMART zf_4 410 434 IPR001876 -
Dere05g1193 1068 PANTHER RNA-BINDING PROTEIN 204 1064 - -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 226 244 - -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 165 296 - -
Dere05g1193 1068 ProSitePatterns Zinc finger RanBP2-type signature. 412 431 IPR001876 -
Dere05g1193 1068 MobiDBLite consensus disorder prediction 662 684 - -
Dere05g1193 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 463 543 IPR000504 GO:0003723
Dere05g1193 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 465 531 IPR000504 GO:0003723
Dere05g1193 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1193 Dere-ChrDere05 19133093 19140849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1193 301 527 Eukaryotic Initiation Factors Gene Family AT2G36660 25.591 6.80e-10 61.2