Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1190 ATGGCGATGCTGTTGAGGAAGGTGTGGGAATCGATGTCGAACCGTTCGAGTTCGAGTTCGAGTTCAAATTCCCGCTCAACGGAACACGTTCGTTGGGTGGATTCACCTCTCGGGGCATTCGAGAAAATCCCTTCCGACATTTTGATCCAAATCCTGTGGCTTCTGGGTCCAAAAGAAGCTGCGAAATTAAGCCTTGTGTGCAAAGCATGGAGATGGCTTGTCTCCGATAACCGTCTTTGGATTTACTTCCTTCAGACCCACCAACCGGAGCCATGGGATTACATTTTTTTCGCCGAGACCAATCTGAGGTCTGGCTACCCTCTTCAAACCTTCGTTGGTCAGGTGCCTCAGCTATCTTTCAAGGGTATATATGGCCAACGAGAACTAGTTCCTGGTTCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATACGCATGCCCATCAGGACGATCGGCAACCTTTTTGGAATTTGGTAACATTGAGTCTCCGATGTACACTAGACTTCGACATTTTTTCGCAACTATTTATAGCAGGATGCAGGTGAAACCAAGTACTCAACCAGTCATTGTTTCTATACCAATATGCCATTACGATGATACTGAATCTGCCAAAGCATCAAGACGGCAGCTTAAGGAGGCAATATGTGCTGCCTTGTTTGACATGAATGTTCCTGCTATTTGTGCTGTCAACCAGGCCACTTTGGCTCTGTATGCTGCAAAAAGAACTTCTGGAATAGCTGTTAATATTGGTTTTCAGGTCACATCTATAGTCCCAATTCTAAATGGTAAAGTTATGCGCAAGGTGGGCGTGGAAGTTGTGGGAATGGGTGCCCTAAAACTTACAGGATTCCTTAGGGAGCTGATGCAACAGAACAATATAACTTTTGAATCTTTGTACACTGTTCGCACACTAAAAGAGAAGCTATGCTATGTTGCTATTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTACACTTTCAAAAGAGCGGTTTCAAACAGGAGAGATCTTGTTCCAGCCTTGTCTTGCTGGATTGCAAGTAATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGCGACCCTGATTGGTTTAAGACTGTAGTTCTATCTGGGGGTACTGCATGTTTACCAGGTTTGGCAGAAAGGTTAGATAAGGAACTCCATGAGTTACTTTCTCCCCATGTGTCCAGTGGAATCAGAGTCATACCTCCTCCATATGGTGCTGATACTGCATGGTTTGGAGCAAAGACTATTGGCAATTTGAGCACCTTTCCTGGTTCCTGGTGTACAAAGAAGAAGCACTTCCATAAATCTAGACTCAATCTCATATGGTGA 1413 0.4459 MAMLLRKVWESMSNRSSSSSSSNSRSTEHVRWVDSPLGAFEKIPSDILIQILWLLGPKEAAKLSLVCKAWRWLVSDNRLWIYFLQTHQPEPWDYIFFAETNLRSGYPLQTFVGQVPQLSFKGIYGQRELVPGSVIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYSRMQVKPSTQPVIVSIPICHYDDTESAKASRRQLKEAICAALFDMNVPAICAVNQATLALYAAKRTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGMGALKLTGFLRELMQQNNITFESLYTVRTLKEKLCYVAIDYEAELSKDTQASFEAAGEGWFTLSKERFQTGEILFQPCLAGLQVMGLHQAIALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELHELLSPHVSSGIRVIPPPYGADTAWFGAKTIGNLSTFPGSWCTKKKHFHKSRLNLIW 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1190 470 SMART actin_3 131 461 IPR004000 -
Dere05g1190 470 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Dere05g1190 470 Gene3D - 238 436 - -
Dere05g1190 470 CDD F-box_AtARP8-like 39 83 - -
Dere05g1190 470 Gene3D - 36 106 - -
Dere05g1190 470 SUPERFAMILY F-box domain 36 100 IPR036047 GO:0005515
Dere05g1190 470 PANTHER ACTIN 175 460 IPR004000 -
Dere05g1190 470 SUPERFAMILY Actin-like ATPase domain 133 253 IPR043129 -
Dere05g1190 470 Gene3D Actin; Chain A, domain 4 281 364 - -
Dere05g1190 470 Pfam F-box-like 41 80 IPR001810 GO:0005515
Dere05g1190 470 Pfam Actin 180 459 IPR004000 -
Dere05g1190 470 SUPERFAMILY Actin-like ATPase domain 247 460 IPR043129 -
Dere05g1190 470 Gene3D - 176 459 - -
Dere05g1190 470 CDD NBD_sugar-kinase_HSP70_actin 134 278 - -
Dere05g1190 470 SMART fbox_2 43 83 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1190 Dere-ChrDere05 19101396 19113785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1190 180 460 Cytoskeleton Gene Families AT3G12110 31.034 1.12e-38 142