Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1176 ATGGCAAACCAGGGAGCTGGGTTACTTTTGATTAGGGATTTTCTAGTCCAAACGCATTCCTCCATAATCGCAGAGTGGGAAAAATTTGGACGCTTTGGATTACGAGGAATGCTTGCTGCTGCTTCTTCTGCTTCCAAAGGCGTTCGAGCTTTAGAGCTTCTTCAACGCGATGTTAGACCCGGGATAGTATCAAACCGTGCCATTGCCAGAAGTTATTTTGAACCTTCTTCTTGTGTTAATTTGAGCAGGAACAGTTGGAGTAGCAATCAAGTTCAATCGTTTGTTGGTGTCTCTGGCATCAGCGCCTACCCTACTCGTGGTATTAGAATTAGTAGAGATGGCTTAAACTTCAATCCGAGTACTCCCAGAAGATCTACGAGTTTACGTCTTTGTGTAAAGGGGTTTCTCTCCGATAAATCACCTTCCTATTCCTCTTCGTTATATAGCAGAGTAACTAGGCCTTGCTTTCCACAACCAAGTTCAACTCTAGACGGGCGAGCATTGTTCTCAACTTCAACTAAAGCTGATGATGGAACGTCCTCGAAGAAGATCGATACCCAGAACCAAAAAACTACTACCACAATTGCTAAAACGCCTTCAGGAGAAGAAATTACTGACACGAAAATCATCCGTACACTTGCCAGTTACTTATGGATGAAAGATAATCTTGAATTTCGATTCCGAGTTGTTGCTGCTTTGGGTTTTCTTGTTGGTGCTAAGGTACTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTAACGACTGCCACAGGCAATGCTAGTGCTCTTGCTTCTTTTACAGCTGCAAATTCAACTCTGTTAGCTCTTTTCGCAACCCCAGCATCTGTGCTAATTGGATATGGAATTGCACGTTCTGGGGCTTCTGCTTTCAACGAACTGCGTACTGCTGTATTTTCTAAGGTAGCATTGCGAACAATTCGATTAGTATCTAGGAAGGTGTTCTCACATTTGCATGACCTTGACCTACGGTATCATCTAAGTCGAGAAACTGGAGCATTAAATAGAACAATTGATCGTGGTAGTCGGGCAATAAATTTTATTCTCTCATCTATGGTGTTCAATGTGGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCGTACAAATTTGGAGCACCTTTTGCGTGGATCACATCCCTATCAGTTGCTGCTTATGTTATTTTTACACTGACTGTCACACAGTGGAGGACTAAGTTCAGGAAGGCCATGAATAAAGCTGATAATGATGCAAGTACCAGGGCAGTTGATTCACTCATTAATTATGAGACTGTCAAATATTTCAATAATGAAGATTTTGAAGCTGAAAAATATGACGAGTATCTAAAGAGGTATGAAGACGCAGCTCTAAAAACACAGCGCAGTCTTGCTTCTCTGAACTTTGGTCAAAATGTTATATTTAGTACTGCACTTTCTACGGCAATGGTGTTGAGTTCTCATGGGATTATGAATGGCCAGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTCCTCTTCCAATTATCTCTTCCACTTAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAGTCCATGTTTCAGTTGCTGGAGGAAAGAGCTGATGTTAGGGATAAAAAGAATGCAATGCCTCTGAAGTTAAATGGAGGGAGCATCCAGTTTGAAAATGTACACTTCAGTTACCTTGCAGAGAGAAAAATACTTGATGGAATATCTCTTGTTGTACCAGCTGGAAAAAGTGTGGCAATAGTAGGGACTAGTGGAAGTGGCAAAACAACCATTCTTAGATTGCTCTTCAGGTTTTTTGACCCACATTCTGGAAGTATAAAGATAGATGGTCAAAATATCCAGGATGTAACCCTCAATAGTCTTAGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACAATATTTCACAACATTCACTATGGTCAACTTTCAGCAACCAAAGAGGAAGTCTATGAAGCTGCTCGAAAAGCAGCAATTCATGACACTATCATGAATTTCCCTGAGACATATTCAACCATTGTGGGAGAACGAGGGCTCAAGTTAAGCGGTGGCGAGAAGCAACGTGTTGCCTTAGCTCGTGCCTTTTTGAAAGCGCCTGCAATTTTGTTGTGTGATGAAGCTACAAGTGCGCTTGACAGCACAACAGAAGCAGAGATATTAAGTGCATTGAAATCTTTAGCAAATAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATCGTAGTGTTGGAAAATGGAAAGGTGGTTGAACAAGGACCACATGAACTGCTCTTATCAAAAGAAGGAAGATATGCACAGCTTTGGGGACAGCAAAATAACACAATAGATGCAATAGATGCAGCCATCAAAGTTGGGACATAG 2448 0.4126 MANQGAGLLLIRDFLVQTHSSIIAEWEKFGRFGLRGMLAAASSASKGVRALELLQRDVRPGIVSNRAIARSYFEPSSCVNLSRNSWSSNQVQSFVGVSGISAYPTRGIRISRDGLNFNPSTPRRSTSLRLCVKGFLSDKSPSYSSSLYSRVTRPCFPQPSSTLDGRALFSTSTKADDGTSSKKIDTQNQKTTTTIAKTPSGEEITDTKIIRTLASYLWMKDNLEFRFRVVAALGFLVGAKVLNVQVPFLFKLAVDWLTTATGNASALASFTAANSTLLALFATPASVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALNRTIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVIFTLTVTQWRTKFRKAMNKADNDASTRAVDSLINYETVKYFNNEDFEAEKYDEYLKRYEDAALKTQRSLASLNFGQNVIFSTALSTAMVLSSHGIMNGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKKNAMPLKLNGGSIQFENVHFSYLAERKILDGISLVVPAGKSVAIVGTSGSGKTTILRLLFRFFDPHSGSIKIDGQNIQDVTLNSLRKSIGVVPQDTVLFNDTIFHNIHYGQLSATKEEVYEAARKAAIHDTIMNFPETYSTIVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLANNRTSIFIAHRLTTAMQCDEIVVLENGKVVEQGPHELLLSKEGRYAQLWGQQNNTIDAIDAAIKVGT 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1176 815 FunFam ABC transporter B family member 25 557 811 - -
Dere05g1176 815 SUPERFAMILY ABC transporter transmembrane region 224 544 IPR036640 GO:0005524|GO:0016020
Dere05g1176 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 565 799 IPR003439 GO:0005524
Dere05g1176 815 FunFam ATP-binding cassette sub-family B member 7 201 553 - -
Dere05g1176 815 CDD ABC_6TM_ATM1_ABCB7 232 539 - -
Dere05g1176 815 Gene3D - 556 810 IPR027417 -
Dere05g1176 815 Gene3D ABC transporter type 1, transmembrane domain 216 555 IPR036640 GO:0005524|GO:0016020
Dere05g1176 815 SMART AAA_5 590 776 IPR003593 GO:0016887
Dere05g1176 815 Pfam ABC transporter 581 730 IPR003439 GO:0005524
Dere05g1176 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 800 IPR027417 -
Dere05g1176 815 CDD ABCC_ATM1_transporter 565 800 - -
Dere05g1176 815 ProSitePatterns ABC transporters family signature. 702 716 IPR017871 GO:0005524|GO:0016887
Dere05g1176 815 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 230 531 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere05g1176 815 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 211 796 IPR039421 -
Dere05g1176 815 MobiDBLite consensus disorder prediction 171 192 - -
Dere05g1176 815 Pfam ABC transporter transmembrane region 232 518 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1176 Dere-ChrDere05 18830751 18848310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1176 401 801 Calmodulin-binding Proteins AT2G36910 36.165 7.01e-65 234
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1176 05 18830751 18848310 Dere05g1176 05 18830751 18848310 ECH