Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1173 ATGAGCAGGAGTAGCCAAAAGAGGGAGAGAAACCCAGGGGACCGAGAGATAGAGGAGGAAAAGAAGAAGAAAGCTGAGTGTGAGAAAGCCGATAAGAGGACCAAGGTGGAGAAGCTGCGAGCGACGATAGGGAAGTACCCGCAGGGAGCCACGTCACCATCATGTTTAGCAGGAAATGAGCAAGAGAACAGAAGCTCGTTGGACTTCTACACTGGCATTTTCGAGCTCGAGAAGTCCAGGATCACGGAGATAGTGAATCAGGCAGTGGACGAACTAGTAAAGATGGCCACCGTAGGGGAACCACTATGGGTTCACAGTGTTGAGACTGTCCATGAGATTCTTAACTACGAAGAGTACGTGAAGGAGTTCTCCATTGAGAGCTCCAGCAGTGCAAGACCCAAGAGGTCCATCGACGCTTCCAGACACACTGGTGTCGTATTCGTGGACCTCCCGCGACTCGTCCAAAGATTCTTTGATGTGAATCAATGGAAGGAAATCTCTCCATGCTTGATATCAAAGGTTGCATCTGTAGATGTTATATGCAGCGGAGAAGGTGCTAATAGGAATGGTGCAGCTGATGTTGGCTGA 588 0.4949 MSRSSQKRERNPGDREIEEEKKKKAECEKADKRTKVEKLRATIGKYPQGATSPSCLAGNEQENRSSLDFYTGIFELEKSRITEIVNQAVDELVKMATVGEPLWVHSVETVHEILNYEEYVKEFSIESSSSARPKRSIDASRHTGVVFVDLPRLVQRFFDVNQWKEISPCLISKVASVDVICSGEGANRNGAADVG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1173 195 Coils Coil 15 42 - -
Dere05g1173 195 ProSiteProfiles START domain profile. 74 195 IPR002913 GO:0008289
Dere05g1173 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 191 IPR042160 -
Dere05g1173 195 SUPERFAMILY Bet v1-like 75 172 - -
Dere05g1173 195 MobiDBLite consensus disorder prediction 1 31 - -
Dere05g1173 195 Pfam START domain 84 183 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1173 Dere-ChrDere05 18803661 18809271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1173 28 188 Homeobox Transcription Factor Family AT1G79840 53.704 6.42e-49 167