Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1118 ATGACAATGGGAGAAGAGTCTTTAGCAATATCATCAGTCCCCTTTGACAGAGCAGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGAAAGCCAAAGCTCTGCCCTTTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTATCCCGGACAGCAGGAAAAACATTTGCGGTTAAGTGCAGTCACAAAAATTATTCAAGGGCAGGAAAATATAAAGTCCCAAAAGCAAAATTACAATGGAAAGGAGTGCCATTCCTTTTCTCTAATTTATGCAAATGGTGAACGCTCACTTGATCTGATATGCAAAGACAAAGCACAGGCTACTTCTTGGTTTGTGGGCTTGAAAGCTGTAATATCTCAATCCCAGCATCCAAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTAAGAAGAAAGAAAAACCTTGGGCTTCTGGAGGATACTGCTGAATTTACTAAGGTACACAGCGTGTGTGCAAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCAGATGGCCTATCGTATACTTGTGACAGCTTTTATTCATCAGAGTCTATCCTGTCCAATACTCAAAAGGCAACTGATAATTCAGTTCCAAATTCTCCATATATCGATCCGGATATTCTTAATAAGAGTGGATCAACATATGTTGACACAGAGTACCAGAAGAATTTGCCATATAGGTATCTTCTGCCTGACATTTCCCCGCGTGTAGGAAATAGCAATTTATTGAAAGATGTCATGATTTGGGGTGGAGGGATTGTTGAATTTGTTGAAAATAGGAATGATCAGTTTGTAGAACAACAGGGAATTAACGTGGTATTGCCAAAGTTACTGGAATCCACCATGATGCTAGATGTACAAAACATAGCATTAGGGGGAAAACATTCTACCCTAGTTACAAAACAAGGTGAAGTGTTGAGCTGGGGTCAGGGGAAGGGAGGAAGGCTGGGGCACAAGATTGATATCAATATAAGCTCCCCCAAAATTGTTGATTCTCTTAATGGGATTCATATAAAATATGTAACCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGCGAAGTATATGCATGGGGGGATGATGGTTGTGCTGCAAATCAGTCTGATGAAGGGAAATATATAAGTCAGTGGATACCACATAAACTCTCTGGTCCTTTAAATGGTATTAGTATTTCAAATGTCGCTTGCGGGGAATGGCATACTGCAATTGTCTCTTGCTGTGGACGTCTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGGCATGGGGATTGTCAGAACATTTCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCGATTGTTGAAGTCATGGTTGACCGTTTTCGGTATAATACTGGCAAGCTGTTTACTTGGGGTGATGGAGACGAAGGAATGCTTGGTCACACTGATAATGGAAGGAAGCTTTTGCCAACTTGTGTCGCACAACTTTTGGATTATGATTTTGTTGAAGTTTCTTGTGGAAGAATGTTGACTGTAGCACTCACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAGTGCATGGACAGCTAGGAAACCCACATGCCAAGGATAAAGCGGTGACAATTGTTGAAGGATTGCTTAAACAGGAATTTGTGAAAAAGATATCATCAGGTTCATATCATGTTGCTGTCTTGACTTCTGCCGGGAGTGTCTACACATGGGGAAAGGGTGCAAATGGACAGCTAGGTTTGGGTGACACCGAAGACAGATACTCACCATCTTTTGTTGAGGCTCTAAGAGAAAGGCAGGTAGAAAGTATCACTTGTGGACCAAGCAGCACAGCTGCAATCTGTTTACACAAACCAATTTCTATCAGTGACCAATCAGCTTGTAGTGGTTGTAAATTACCCTTTGGATTTACAAGGAAGAAGCATAACTGCTATAACTGTGGCATCCTGTTTTGTCATTCATGTAGTAGTAAGAAAGCCACGAATGCGTCTCTAGCACCAAATAAGAGCAAGGCTTTTCGGGTTTGTGATCAATGCTTCAATAAACAGCATGGAAGTATACCTACAGTTATGGTGTCAAAGTCGGGCAGAAATTATAGCACTCAGCAGCTGCTAAAGAATAAGAACAAATTTCCTGATCTTACAGAAGATAGAGGAGAAACAACTGTGACACAGGGTCCTTTGTTGTCTCTCGGTCAATCATGTTACAAAAGAAGCATGCCAGGTGGAAGGAAGGACTGGAAAAGCCAGCAAGAAAGCCAGCAGAATGTAGAAAATATATCTTGTGCGTTTGGTGTAGTGCCACAATGGGGGCAAGTTCCATGTCCTGTCCTGTTCAAAAATTGTGCAGTAAATTCTGTTTCATCATCCAAAAATAAATCAGGTTCTCTTACTTCAGTGAATTCAGAATCTACATTATCCAACATCATGTATGGAGAGAAAGATACAACAAAGTCTGATAGGATGTTCATAGAAGAAGTTCAGAGGCTAAGAGCTGAGGTTAGAAGCCTTGAAGAGCAATGTGAGATTGGAAACCTTAAGATACAAGAATGTCATAAAAAAATTGAGGAGAGTTGGCACTTGGCAAGGGAGGAGGCTGCAAAAAGTAAGGCAGCGAAAGAGGTCATAAAAGCATTGGTATTAAGGCTACGAACAATATCAGGAAATACCCTTGCCGGCCAAGAAGGAAAGCTTGGGCTACATGAATGTCTCTCGAATTTGACACCCATAAATACAGAAATCCATACTCCAAAGGATGGCAATGTGGACAGTCTATCTAATTCACCTATAGTGTTCTCTGACACATTAAAATCCAAATTTGCAAGAAGTATGTTCCTCAAAAGTGATAGGTCAAAGGAGGATTCTCAGTTCACTAGAGCAGAACCTCGGCAAGACAGCACTGAAGGTTTGAATGTTGAATGGGTAGAACAGCATGAGCCTGGTGTTTACATCACCTTGACTACCTTGCCAAGTGGGCAGAAGGGTCTTAAGAGAGTGAGGTTTAGCCGGAAGCAATTTTCTGAGAAGGAAGCTGAGCAATGGTGGGAGGAGAATCAAGCCATAGTCTACCGAAAATATGGGATTGAAGGATATATAAACACTAGCCAAAACTGGGAGAAGGGCTAA 3222 0.4134 MTMGEESLAISSVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYPGQQEKHLRLSAVTKIIQGQENIKSQKQNYNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLKAVISQSQHPKPFSSLRSCKGVQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESILSNTQKATDNSVPNSPYIDPDILNKSGSTYVDTEYQKNLPYRYLLPDISPRVGNSNLLKDVMIWGGGIVEFVENRNDQFVEQQGINVVLPKLLESTMMLDVQNIALGGKHSTLVTKQGEVLSWGQGKGGRLGHKIDINISSPKIVDSLNGIHIKYVTCGEYHTCALTDSGEVYAWGDDGCAANQSDEGKYISQWIPHKLSGPLNGISISNVACGEWHTAIVSCCGRLFTYGDGTFGVLGHGDCQNISQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGDEGMLGHTDNGRKLLPTCVAQLLDYDFVEVSCGRMLTVALTNMGKVFTMGSAVHGQLGNPHAKDKAVTIVEGLLKQEFVKKISSGSYHVAVLTSAGSVYTWGKGANGQLGLGDTEDRYSPSFVEALRERQVESITCGPSSTAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGILFCHSCSSKKATNASLAPNKSKAFRVCDQCFNKQHGSIPTVMVSKSGRNYSTQQLLKNKNKFPDLTEDRGETTVTQGPLLSLGQSCYKRSMPGGRKDWKSQQESQQNVENISCAFGVVPQWGQVPCPVLFKNCAVNSVSSSKNKSGSLTSVNSESTLSNIMYGEKDTTKSDRMFIEEVQRLRAEVRSLEEQCEIGNLKIQECHKKIEESWHLAREEAAKSKAAKEVIKALVLRLRTISGNTLAGQEGKLGLHECLSNLTPINTEIHTPKDGNVDSLSNSPIVFSDTLKSKFARSMFLKSDRSKEDSQFTRAEPRQDSTEGLNVEWVEQHEPGVYITLTTLPSGQKGLKRVRFSRKQFSEKEAEQWWEENQAIVYRKYGIEGYINTSQNWEKG 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Dere05g1118 1073 Pfam Pleckstrin homology domain 20 126 IPR001849 -
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Dere05g1118 1073 SUPERFAMILY PH domain-like 18 128 - -
Dere05g1118 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 720 IPR013083 -
Dere05g1118 1073 SUPERFAMILY RCC1/BLIP-II 268 650 IPR009091 -
Dere05g1118 1073 Gene3D - 484 656 IPR009091 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 598 646 IPR000408 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 546 594 IPR000408 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 377 428 IPR000408 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 494 542 IPR000408 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 326 374 IPR000408 -
Dere05g1118 1073 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Dere05g1118 1073 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 471 481 IPR000408 -
Dere05g1118 1073 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1058 IPR013591 -
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 432 IPR000408 -
Dere05g1118 1073 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 309 322 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Dere05g1118 1073 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Dere05g1118 1073 Coils Coil 852 879 - -
Dere05g1118 1073 Gene3D - 18 135 IPR011993 -
Dere05g1118 1073 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 63 916 - -
Dere05g1118 1073 Gene3D - 263 483 IPR009091 -
Dere05g1118 1073 ProSiteProfiles BRX domain profile. 1004 1059 IPR013591 -
Dere05g1118 1073 CDD PH_PLC_plant-like 17 129 - -
Dere05g1118 1073 SMART fyve_4 648 717 IPR000306 GO:0046872
Dere05g1118 1073 SUPERFAMILY FYVE/PHD zinc finger 655 720 IPR011011 -
Dere05g1118 1073 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Dere05g1118 1073 Pfam FYVE zinc finger 656 714 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1118 Dere-ChrDere05 17935571 17943291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1118 1005 1063 Major Intrinsic Protein MIP AT1G31880 44.068 4.05e-11 64.3