Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1115 ATGAAAATGTCACTTGCTCTGTTTAGCATACTAGCTATTCTACTCGCTCTCTCTTCAACAACCACCTCCCATTACTCCTTCTCTTCTTCTTCTTCTCCACCTTCTTCTGGTCAGCCATCTTCATCTTCCTCCTCGCTCTCCGAATGGCGATCTGCACACGCCACTTACTACGCTGCCGCAGATCCCAGGGACGCGGTGGGCGGCGCATGTGGCTACGGCGACCTCGTCAAAACAGGTTACGGCATGGGCACCGTGGGTCTCAGTGAGTCACTCTTCGAGCGTGGCCAGATCTGTGGTGCCTGCTTCGAGCTCCGTTGCGTCGACGACCTCCGCTGGTGTATCCCCGGAACCTCCATTATCGTCACCGCCACGAACTTCTGTGCGCCGAACTACGGCTTCACGGCCGAGGGAGGTGGCCACTGCAACCCTCCGAATAAGCATTTCGTGCTCCCGATTGAAGCGTTCGAGAAGATCGCTATTTGGAAGGCTGGGAACATGCCGGTCCAATATCGGAGGATAAAGTGCAGAAAGCAAGGAGGAATACGATTTACAATCACTGGTTCTGGCATCTATATCTCAGTGCTGATCAGCAATGTAGCTGGCACTGGAGACGTTGTTGCCGTGAAGATTAAGGGCTCAAGAACTGGTTGGCTTCCAATGGGTCGAAATTGGGGCCAGAACTGGCATGTAAATGCATTACTACAGAATCAACCTCTTTCATTTGAGGTCACTGGTAGTGATGGGCTAACAGTGACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTCGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAA 825 0.5176 MKMSLALFSILAILLALSSTTTSHYSFSSSSSPPSSGQPSSSSSSLSEWRSAHATYYAAADPRDAVGGACGYGDLVKTGYGMGTVGLSESLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKQGGIRFTITGSGIYISVLISNVAGTGDVVAVKIKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGLTVTSYNVAPKDWSFGQTFEGKQFES 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1115 274 CDD DPBB_EXPA_N 52 175 - -
Dere05g1115 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 269 IPR007117 -
Dere05g1115 274 SMART dpbb_1 84 170 IPR007112 -
Dere05g1115 274 Gene3D - 180 272 IPR036749 -
Dere05g1115 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 180 IPR007112 -
Dere05g1115 274 PANTHER EXPANSIN-A15 19 272 IPR002963 GO:0009664
Dere05g1115 274 SUPERFAMILY PHL pollen allergen 177 269 IPR036749 -
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Dere05g1115 274 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 255 271 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 155 168 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 119 129 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 179 191 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 106 117 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 226 247 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 79 93 IPR002963 GO:0009664
Dere05g1115 274 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Dere05g1115 274 Pfam Lytic transglycolase 85 170 IPR009009 -
Dere05g1115 274 Gene3D - 33 176 IPR036908 -
Dere05g1115 274 SUPERFAMILY Barwin-like endoglucanases 48 198 IPR036908 -
Dere05g1115 274 Pfam Expansin C-terminal domain 181 258 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1115 Dere-ChrDere05 17884501 17887144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1115 48 274 Expansin Gene Family AT3G03220 84.581 4.75e-151 421