Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1111 ATGGCCCTTTTAACTACCGTCAAACAACGATTCAACCGGAAAACCCTCAAATCGTTGAGGGAAAAACCTTCCATGTTTCCCGCCAAACCCAAGTCCGCCGTTTTCCTGGCCGCCGCCGTCCTCATTTCCTCTCCAGCCGCCAACTACGTTCTCACTCTTCCCTCCTCCGATTCTTTTCCCGGGAAAATCAGCACAGTAATCCATGGCATCCTCCGCTCCTCTCGCGCCATCACCACCGTTGCTTGCACCGTTGCTGACTACAAGTTGTTTTTGCGCGGGCTTCAGAAGGATTCCGACGAGTGTCGGCACAAAATGTCCGAGGTTCATCTACGGTCAGCCAAGAGGATTCTGAAGTTATGCGAAGCCAATAAAGGATTTTATGTGAAGGCTGGACAGTTTGTCTCTGCTCAGAGTGTGATTCCTAAGGAATACTCATCAACTTTGTCCGCATTGGAGGATCAGGTTGCTCCTTGTTCTTTTAAAGCTATAAAAGAAGTGTTAAAACACAATCTGGGACCAGATTTTTCTGAGATGTTTTTGTCTGTTAATGAACAACCAATTGCTGCTGCATCTATTTCTCAAGTTCACCATGCAGTGTTGAAAAGCGGTCATCAAGTAGCAATTAAGGTGCAATATCCTGGGATAGAGCAGCAGATGAATTTTGACACAAGAACAATGTCTTTCCTATCCAAAACTATTGCATGGTTTTTTCCTGAATACAGGTTTGAATGGCTGGCATCAGCGTTTACAAAGGCCTTATTATTGGAACTGGATTTTGTTCAGGAGGCAAGGAATTCTGAGAGAGCTGCCAAAATCTTCAGAAACAACAAATTAGTCAGGGTTCCTCATGTATTCTGGGAGTTGACTACTAGACAAGTCCTGACCATGCAGTTTTGTACAGGACACAAGATTGATGATCTAGACTTTCTGAAGCAGATTGGGATTGCTCCAGAAAAGGTGGCAAGTGCATTGATGGAACTTTTTGCTGAAATGATATTTGTGCATGGTTACATACATGGTGATCCGCACCCTGGAAATATATTAATTTCTCCTGAAGGTTCTAATGGCTTCTCTTTGGTACTTCTAGATCATGGAGTATACTGGGAATTGGATGAAGAATTTAGGAAAGACTTTTGTCAGTTATGGGAGGCTTTGATTCTACAAGACTCGAAGAAAATTATGTGTCTTGGTGAAAGATTTGGTGTGGGAAAGTATTCTAAATACCTGCCTATCATTTTCACTGGAAGAAATATTGAAAGTAAATCTGGTCTTGGCAGCAGAATGTCAATTGAGGAGAAAGAAAATATGAAAAAGGAGTTGAAGTCTCTTTTACTGGAGGACTTTTCAGCATTCATGGAGTCCCTGCCTCCAGAGTTTCTCACTATTATGCGTGTAGATGGGTTATTAAGGTCTATCATTAGAAAGTTAGGCGTCTCACGATCTATCAGGTGGCTAGCTTACGCCAAATATGGGATGTACGGTATTCATCTAAAGTTGGATGCTGAAACAGATTTTGCTGGAAAAGCTGTGTTTTCCGGATTCATATCAGAGTTAAAATATCATCAAATCCTAATAAAGCTCATTGTGGGGGAGATTGAGGCTAAGCTTGTTGACCCTTTGCTGCAGAAGGTGAAGAATGCACTGCTTTCCATACATCGCAAGATTGGTAGTGACTTTTGGGGCCTCCTGGTGCATTCTGTTTTTCTTCTTTTTCTCATACGTCGTGACCTTTCTCCTCCACTTCCCCTATTTAAGTCTCCCATTCCTCTTCCATTCTTCCTCACACCAAAGCTCAAATCTCACTCCTCTCACTCTCTTGATTTCTCTCCACCGTCAACCGCCATAATCTCCGCCATGGTTCTCTCGAAAACCTCCTCCCAGACCGACGTCTCCGTCCACTCCACCTTCGCTTCCCGCTATGTTCGCGCTTCGCTTCCCAGATTCAGGATGCCGGAGGAGTCGATTCCGAAGGACGCAGCGTTTCAGATAATAAACGACGAGCTGATGCTGGACGGGAATCCTCGGCTGAATCTGGCGTCGTTCGTGACGACGTGGATGGAGCCGGAGTGCGACAAGCTCATCATGGCCGCCATCAACAAGAACTACGTCGACATGGACGAATACCCCGTCACCACTGAACTCCAGAATCGGTGCGTGAACATGATAGCTCATCTCTTCAATGCGCCACTTGGAGAGTCAGAGGCTGCAGTTGGTGTTGGCACCGTTGGGTCATCGGAGGCCATCATGTTGGCTGGTTTGGCTTTCAAAAGAAAGTGGCAGAACAAAAGAAAGGCTGAGGGAAAGCCCTATGACAAACCCAACATCGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTCGAAGTGGAGCTGAAGGAGGTGAAACTGAGAGAAGGATACTACGTCATGGACCCTGAAAAAGCAGTGGAGATGGTGGATGAGAATACCATCTGTGTTGCTGCTATCCTCGGCTCCACACTCAACGGAGAATTCGAAGATGTCAAGCGCTTGAATGATCTCCTTATCCAAAAGAACAATGAAACAGGATGGGATACGCCAATTCACGTGGATGCAGCAAGTGGAGGGTTCATAGCACCATTTATATACCCAGATTTGGAGTGGGACTTCAGGTTGCCACTAGTGAAGAGCATAAACGTGAGTGGACACAAGTATGGTCTGGTGTACGCAGGCATTGGGTGGGTCATCTGGAGAAGCAAGGAGGACTTGCCTGAGGAGCTCATCTTCCACATCAACTATCTCGGAGCCGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGTTCAAGTCAAGTTATTGCTCAGTACTACCAGCTCATTCGCTTGGGTTATGAGGGGTACAGGAACGTGATGGAGAACTGCAGAGACAACATGCTGGTGCTGAAAGAAGGACTTGAGAAAACAGGCAGATTCAGCGTCGTGTCTAAAGACGACGGCGTTCCACTGGTGGCCTTCACTCTCAAGGACAACACCCACTTCAACGAGTTCCAAATCTCCGACCTGCTCAGGCGGTTCGGGTGGATCGTGCCGGCCTACACCATGGCTCCTGACGCCCAGCACGTCACCGTCCTACGTGTCGTCATCCGCGAGGACTTCTCCAGAACCCTCGCAGAGCGCCTCGTGCTCGACATCCAGAAGGTTCTGCACGAGCTTGACCTGCTCCCTCCCAAGGCGGTGGCTAGCACCACCCTGACGGTCGCCGAAGAGCAGGTTGTGAACGGTGCCAACAATGGCAGCGTGGCGGCGGCGAAGAAGAGTGCTTTGGAGACGCAGAAGGAGATCACTGCTGTTTGGAAGAAGTTCGTCATGCAGAGGAAGAAGAACAATGAAAAGATGAATGGTGTTTGCTAG 3384 0.4737 MALLTTVKQRFNRKTLKSLREKPSMFPAKPKSAVFLAAAVLISSPAANYVLTLPSSDSFPGKISTVIHGILRSSRAITTVACTVADYKLFLRGLQKDSDECRHKMSEVHLRSAKRILKLCEANKGFYVKAGQFVSAQSVIPKEYSSTLSALEDQVAPCSFKAIKEVLKHNLGPDFSEMFLSVNEQPIAAASISQVHHAVLKSGHQVAIKVQYPGIEQQMNFDTRTMSFLSKTIAWFFPEYRFEWLASAFTKALLLELDFVQEARNSERAAKIFRNNKLVRVPHVFWELTTRQVLTMQFCTGHKIDDLDFLKQIGIAPEKVASALMELFAEMIFVHGYIHGDPHPGNILISPEGSNGFSLVLLDHGVYWELDEEFRKDFCQLWEALILQDSKKIMCLGERFGVGKYSKYLPIIFTGRNIESKSGLGSRMSIEEKENMKKELKSLLLEDFSAFMESLPPEFLTIMRVDGLLRSIIRKLGVSRSIRWLAYAKYGMYGIHLKLDAETDFAGKAVFSGFISELKYHQILIKLIVGEIEAKLVDPLLQKVKNALLSIHRKIGSDFWGLLVHSVFLLFLIRRDLSPPLPLFKSPIPLPFFLTPKLKSHSSHSLDFSPPSTAIISAMVLSKTSSQTDVSVHSTFASRYVRASLPRFRMPEESIPKDAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIQKNNETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFSVVSKDDGVPLVAFTLKDNTHFNEFQISDLLRRFGWIVPAYTMAPDAQHVTVLRVVIREDFSRTLAERLVLDIQKVLHELDLLPPKAVASTTLTVAEEQVVNGANNGSVAAAKKSALETQKEITAVWKKFVMQRKKNNEKMNGVC 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1111 1127 FunFam Glutamate decarboxylase 684 978 - -
Dere05g1111 1127 PANTHER GLUTAMATE DECARBOXYLASE 619 1117 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere05g1111 1127 Gene3D - 684 978 IPR015421 GO:0003824
Dere05g1111 1127 Pfam Pyridoxal-dependent decarboxylase conserved domain 651 999 IPR002129 GO:0016830|GO:0019752|GO:0030170
Dere05g1111 1127 SUPERFAMILY Protein kinase-like (PK-like) 153 388 IPR011009 -
Dere05g1111 1127 Gene3D - 619 683 - -
Dere05g1111 1127 SUPERFAMILY PLP-dependent transferases 633 1062 IPR015424 -
Dere05g1111 1127 NCBIfam glutamate decarboxylase 634 1062 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere05g1111 1127 Pfam ABC1 atypical kinase-like domain 151 394 IPR004147 -
Dere05g1111 1127 CDD ADCK1-like 151 393 IPR045307 -
Dere05g1111 1127 CDD DOPA_deC_like 677 1057 - -
Dere05g1111 1127 Gene3D - 979 1066 - -
Dere05g1111 1127 FunFam Glutamate decarboxylase 979 1066 - -
Dere05g1111 1127 FunFam Glutamate decarboxylase 619 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1111 Dere-ChrDere05 17832179 17860708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1111 619 1127 Calmodulin-binding Proteins AT5G17330 81.532 0.0 878