Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1103 ATGCCCTTGGAAGCTGGGATTTTCATAGAACCACCTGCTTCTTCATCAGCCTCTCCTCCTGATCTCTCCCTTCACATAAGCCCTCCATCTACCTCTTCTTCCTTGATTTGCAATAACAACTATGGAGCACAACAACAGCACTTCAATAATTCTTCTTCAACCTCTAATTTCTCTTCTGCAACTCTACTCTCTCATTCTCATCAAGCCCAGGCCCGTACTGAACTCTCTCTGGGTGGTAATTTCAGTGCTGCAGCACCACCAGAAGAAGCTGTCAACAACCACCACAACAAGAACCCTTATTTTCAGACCCATTTCCACCATCTCCACCACCTCCAACCTAACATGAACAATTATGGAGTCTCATTGCTTGATGTATCTTCTTCTTCTTCATCAGACGGCTTGAGGCCCATCAAAGGGATTCCGGTGTATCACAACCGTTCCTTCCCTTTCTTGCCCATAGACCACAACCACAAGGATCATCATCACCAGCAGCAGCAAGCCAAGATGTGCTTATATAACCCCTCTTTCTCCTCTTCTCCGTCGTCTTCGCCGTCGCCGTACTTGGCGGTGGCTGCCGGGGGGATGGATCCGGTGTCGGCGGCGTATAGGGCGGGGAGTGCGAGCAGGTTTAATGGGATTTCTGGAGAAGCTTTCAAATCTCATCATCAATTGCACCATCATCATCATCATCATCAGTATGGGGTGGTTGGGCCACCTTCTCATGAGGCGTCTTCAAGCAGTGGGCTAATGAGATCCAGATTCTTGCCTAAGCTTCCCGCGAAGCGAAGCATGAGAGCTCCCAGAATGCGGTGGACCACCACGCTCCATGCTCGTTTTGTTCACGCCGTCGAGCTTCTCGGCGGCCATGAAAGAGCAACTCCGAAGTCAGTTCTAGAGCTGATGGATGTGAAGGATCTTACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGCCATTCAGACGGATCTGGAGATGACGACATGTTTACAGATCAAAGAGGCAGCAGAACAGATCGGTCAATGCAGCATGACATGGACTACACTTCTACCACCACTACTCTATGGAGCAATTCTTCAAGTAGTAGAGAGCCATGGCTGCAAAATAGTACCAAAGACATTGATAGTCTGAGACCACCTACCTTCCAGTCACAACCAATGTCAGGACATCAAATTGAGGAGTGTGATTCAAGCCCGCTGAAGAACAACTTGTCAGGCTCTAATTTGGAGTGCAAGAACCCAAGCTTGGAGTTTACGTTAGGAAGACCAGATTGGAATGGCAAAGGACAAACCTAA 1335 0.4831 MPLEAGIFIEPPASSSASPPDLSLHISPPSTSSSLICNNNYGAQQQHFNNSSSTSNFSSATLLSHSHQAQARTELSLGGNFSAAAPPEEAVNNHHNKNPYFQTHFHHLHHLQPNMNNYGVSLLDVSSSSSSDGLRPIKGIPVYHNRSFPFLPIDHNHKDHHHQQQQAKMCLYNPSFSSSPSSSPSPYLAVAAGGMDPVSAAYRAGSASRFNGISGEAFKSHHQLHHHHHHHQYGVVGPPSHEASSSSGLMRSRFLPKLPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGDDDMFTDQRGSRTDRSMQHDMDYTSTTTTLWSNSSSSREPWLQNSTKDIDSLRPPTFQSQPMSGHQIEECDSSPLKNNLSGSNLECKNPSLEFTLGRPDWNGKGQT 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1103 444 Gene3D - 266 323 - -
Dere05g1103 444 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 20 441 IPR044847 GO:0000976|GO:0006355|GO:0010158
Dere05g1103 444 FunFam Myb family transcription factor 265 323 - -
Dere05g1103 444 MobiDBLite consensus disorder prediction 223 247 - -
Dere05g1103 444 SUPERFAMILY Homeodomain-like 264 320 IPR009057 -
Dere05g1103 444 MobiDBLite consensus disorder prediction 338 357 - -
Dere05g1103 444 MobiDBLite consensus disorder prediction 322 421 - -
Dere05g1103 444 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 320 IPR006447 GO:0003677
Dere05g1103 444 MobiDBLite consensus disorder prediction 358 421 - -
Dere05g1103 444 Pfam Myb-like DNA-binding domain 268 319 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1103 Dere-ChrDere05 17703561 17709097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1103 1 441 G2-like Transcription Factor Family AT5G16560 42.918 2.56e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere05g1103 Myb_DNA-binding 2.3e-05 CL0123