Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1099 ATGGACCATCCCATTATGTGCTCCTACTACGGAAATGAGAGCTCAATGTTGATGGAGACTGAAGGGTACGGCAGTGACCTTCCAATCCAATCCCGTTCTCATTTGTGGAGCAAGCTTTTCTATGTGAAGTTTTCTGGAACAAGATTCACCAAATCTAGGAAAAGAGATATTGAGCCCAACGCTTTGCTACAGCATTTGCATAAGTTAGAATCACTGAATAGAGGAGATAGTCTGTGGATTCTGTCTCTAAACCTTCTAAAATCCATCCTTCAATTTTGTCTTTTTCCCCCACTACCCAACTTCGTTTCTCTTGCCAAGCGTTCTCATGTCAAGATGAAAAGTTATAACGCTGTACATTGGTGCAAATCTGTAGTTCATGCCATGCCTCCTTGCCAAGTCATGAGACCACAATTTGATCTTGAAGTGGAGGCTTCTGCAGAAAATGAATCTGAAATTAGCAGCCAGGTTGCATCCAACATATCTATACAAGAAATATCTGCAGGTCCTTCTAGTGACAGCTTCAATAACGCTTCTGACCACCCAAACCCTACAGGATTGCATCCAAATAATACAGATCCTTTCTCACTTGACTTAACTCTTACCTTCAATAACAACGAGCTTGGAGTGACTAGAGACTCCATAGGACTCTCATTCTCAAGCACTAGTGAGAGTAGCAATGAACCTGCCTCTCAAACCACAGCAGCCACCATCCCTAGAGTCTTCTCTTGCAACTACTGTCAGCGCAAGTTCTTGAGCTCGCAGGCTCTGGGTGGCCATCAGAATGCACACAAGAGGGAAAGAACACTAGCCAAGAGGGCTATGAGAATGGGGTTTTTCTCTGAGAGATATGCAAGTCTAGCATCTCTCCCTCTTCATGGCTCTTTTAGATCCTTAGGGATAAAAGCACACTCCTCACTTCACCATGGCTTTTCACCATCAATAATGAGGCCTTGTGAGGGGAAAAGCAATGCAAGATTTGATCATGGGTTCGTTGGAATGCCTACGTTCTTGGAGGATGATGAGGCAGAACTGCTATGGCCTGGTAGTTTTCGTCGGATTGGAGAGGTAGATGATAATAATAGTACTCATCGTCATCATTATAATCATCATCAGCAACAGCAACAGCAACAGCAGCAGCAGCAGTGTTTTGTGCTTGCAGGAAGTTCAGATTTGAGTTTTGCAGAGGTGAATCCACAAGTAGACGTTGAGCTAGAGGAGTCAACACCAGACTTAACATTGAAACTTTGA 1248 0.4375 MDHPIMCSYYGNESSMLMETEGYGSDLPIQSRSHLWSKLFYVKFSGTRFTKSRKRDIEPNALLQHLHKLESLNRGDSLWILSLNLLKSILQFCLFPPLPNFVSLAKRSHVKMKSYNAVHWCKSVVHAMPPCQVMRPQFDLEVEASAENESEISSQVASNISIQEISAGPSSDSFNNASDHPNPTGLHPNNTDPFSLDLTLTFNNNELGVTRDSIGLSFSSTSESSNEPASQTTAATIPRVFSCNYCQRKFLSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSPSIMRPCEGKSNARFDHGFVGMPTFLEDDEAELLWPGSFRRIGEVDDNNSTHRHHYNHHQQQQQQQQQQQCFVLAGSSDLSFAEVNPQVDVELEESTPDLTLKL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1099 415 MobiDBLite consensus disorder prediction 170 191 - -
Dere05g1099 415 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 154 415 IPR044246 GO:0009788
Dere05g1099 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Dere05g1099 415 SUPERFAMILY beta-beta-alpha zinc fingers 239 268 IPR036236 -
Dere05g1099 415 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Dere05g1099 415 FunFam Zinc finger protein 2 218 287 - -
Dere05g1099 415 MobiDBLite consensus disorder prediction 357 380 - -
Dere05g1099 415 Gene3D Classic Zinc Finger 220 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1099 Dere-ChrDere05 17648812 17653619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1099 223 415 C2H2 Transcription Factor Family AT1G66140 45.161 1.32e-40 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1099 05 17648812 17653619 Dere05g1099 05 17648812 17653619 CCT
Dere05g1099 05 17648812 17653619 Dere05g1099 05 17648812 17653619 ECH