Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1097 ATGGTTTTGTCCGGGACGCTGAGGAGAGTTTTCCGCCGTGCCCACAAAGACAGAGGCCTTCCCGCCGGTGATCTTGACCTGGAACCCGTGATTCCTACGCATTTCCGGTGCCCGGTGAGCCTTGAGCTCATGAAGGATCCGGTGACGCTGTGCACCGGAATCACCTACGACAGAGACAGCATCGAGAGGTGGATGGAGTCCGGGAACAACACGTGTCCTGTGACGAATCAGGTTCTTTCGAGCTTTCACATGATCCCCAATCACGCCATTCGGAGGATGATCCAAGACTGGTGCGTTGAGCACCGGTCTCACGGGATCGAAAGGATCCCGACTCCGAGGGTCCCCGTCGCGCCGTACGAGGTTTCGGAGACTTGTTCGAGGATAGTTGCGGCGAATCGTAATGGGGATGAGAAGAAGTGTCAGGAATTGGTGGGAAAGATTAAGAATTGGGGGAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAAAATGGGGCTTGTGCTGTGTTAGCCTCCGCCTTTGATTCTTTCTCAAGTGGGTCGATCGAGGAAAATGTGGGTGTTCTAGAGGAGATCTTGGGGGTACTCCCATGGATGATGACTCCGTCACAAGAAGATGCAAGAGCAAAATTGAGGTCTGAAGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCAAGGCAAAATGCGGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTGGCTAAAACTGAAGGTGTAATTGAAGCCTTGGTGAAGATGATTCGAGAGCCTATAGGACCCAATGCTACCAAAGCAAGCTTGACCAAGATTTTCCGCTTGGTTTCCTCGTCAGAGGACAAAGAGAAAATCACACAGAGATTTGTGGAATTGGGTCTGGTTTCTTTGTTGCTGGAGGCCATTGTGGATGCAGAAAAAGGTATATGTGAGAAGGCTTTGGGTGTGTTGGATTGTGTTTGTGATTATGAAGAAGGAAAGGAAACGGTCATGTCGAATGCTCTAACTTTTCCTCTTGCAATTAAGAAGATCCTGAGAGTATCGGCGTTGGCAACTGAGTTTTCAGTCTCCATTCTCTGGAAGCTCTGTGAGAAGGAACATGAAGGAGTTCTGGTTGAAGCAGTTCAACTTGGAGCCTTTCAGAAGCTCTTGGTTTTGTTGCAGGTGGGTTGTGAAGATAGCACGAAAGAGAAGGTCACTGACTTGTTGAAACTATTGAATACTCATAGAAGCAGAGTAGAGTGTGTTGATTCATCCCTGGATTTGAAGCACCTTAAGAAGCCCTTCTAA 1305 0.4874 MVLSGTLRRVFRRAHKDRGLPAGDLDLEPVIPTHFRCPVSLELMKDPVTLCTGITYDRDSIERWMESGNNTCPVTNQVLSSFHMIPNHAIRRMIQDWCVEHRSHGIERIPTPRVPVAPYEVSETCSRIVAANRNGDEKKCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSSGSIEENVGVLEEILGVLPWMMTPSQEDARAKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEMPVRALAKTEGVIEALVKMIREPIGPNATKASLTKIFRLVSSSEDKEKITQRFVELGLVSLLLEAIVDAEKGICEKALGVLDCVCDYEEGKETVMSNALTFPLAIKKILRVSALATEFSVSILWKLCEKEHEGVLVEAVQLGAFQKLLVLLQVGCEDSTKEKVTDLLKLLNTHRSRVECVDSSLDLKHLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1097 434 SUPERFAMILY ARM repeat 133 411 IPR016024 -
Dere05g1097 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Dere05g1097 434 SUPERFAMILY RING/U-box 30 107 - -
Dere05g1097 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 108 IPR013083 -
Dere05g1097 434 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Dere05g1097 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Dere05g1097 434 CDD RING-Ubox_PUB 32 82 IPR045210 -
Dere05g1097 434 Gene3D - 121 244 IPR011989 -
Dere05g1097 434 Gene3D - 245 424 IPR011989 -
Dere05g1097 434 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Dere05g1097 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1097 Dere-ChrDere05 17608745 17610049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1097 21 434 U-box Gene Family AT5G37490 48.456 5.42e-127 372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1097 05 17608745 17610049 Dere05g1097 05 17608745 17610049 CCT
Dere05g1097 05 17608745 17610049 Dere05g1097 05 17608745 17610049 ECH