Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1096 ATGACTAGAAAGAAGGTGAAGCTGGCATTCATAACCAATGACTCTGCGAGGAAGACAACATACAAGAAGAGGAAGAAAGGTATGTTGAAGAAGGTAAGTGAACTGACCACCCTTTGTGGGATTGAAGCATGTGTTATAATTTACAGTCCGTATGATTCTCAGCCGGAGGTTTGGCCATCTCCGGCGAGAGTCGAGAGCATTCTGGCTAAGTTCCGGCAGATGTCTGAGCTGGAGCAGTGCAAGAAGATGATGAACCAGGAGAGTTTCATGAAACAACGGGTCCTCAAAGCTAATGATCAGGTGCAGAAACTGAAGAAAGAGAATAGAGAAAAAGAAATAGCCCAGATCATGTTTCAGTACTTAGGTGCAGGGAAGGTGCTGCATAATCTGAGTATGGTAGATTTGAATGATTTGGCATGGTTGATTGAGCAGAACCTCAGGGATATCAGTAGGAGGATGCAGGCACTGAAAAAGGAGGAGACTCAGAATCAAATACAAATCCAGAGTCTGGAGGGGCGATCCAAAGTGAGAGGAGAAGATGAAGTTATGCAGAAGCAGCAATTGTTTATGGACTTGATGAACAGTGGTGGGGATGGGACTCTTCCATTTGGGGATGTCAATCACCAAAATGCCTTCGGGCCTAACCCCTTTTTTCCTTAA 660 0.4485 MTRKKVKLAFITNDSARKTTYKKRKKGMLKKVSELTTLCGIEACVIIYSPYDSQPEVWPSPARVESILAKFRQMSELEQCKKMMNQESFMKQRVLKANDQVQKLKKENREKEIAQIMFQYLGAGKVLHNLSMVDLNDLAWLIEQNLRDISRRMQALKKEETQNQIQIQSLEGRSKVRGEDEVMQKQQLFMDLMNSGGDGTLPFGDVNHQNAFGPNPFFP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1096 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Dere05g1096 219 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Dere05g1096 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 Coils Coil 139 173 - -
Dere05g1096 219 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Dere05g1096 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere05g1096 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere05g1096 219 Coils Coil 87 114 - -
Dere05g1096 219 PANTHER MADS BOX PROTEIN 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1096 Dere-ChrDere05 17607027 17607686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1096 1 172 Type I MADS-box Gene Family AT5G48670 50.568 9.83e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere05g1096 SRF-TF 5.6e-18 No_clan