Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1091 ATGAAGAAGATTAGGGAAGCAATGAGGAAGCTGAAGTTTCATGAGAAAAAGCTATTGAAGAAGGTAAATTTCTTGGAGTGGAAGAGAGAAGGAGGTCACAGAGAAAATTATGTTATGCGGCGTTATCATGTCACTGGACGTGATGATTACAAGAAATATTCAAGTTTGTGCCGAATGGTTCAGAAGTTAGTAAACATGCTGAAGCAGATGGACCCGAAGGACCCATTTCGGATTGAGATGACCGATATGCTCTTAGAAAAGCTGTACAACATTGGTGTGATTCCAACAAGGCAAAGCATCACACTGTGTGAACGTTTAACAGTGTCATCCTTTTGTCGGCGTAGGCTCTCAACTGTTTTGGTGCGATTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAGGGTCATATACGAGTTGGTCCAGAGACAATTACTGACCCAGCTTTCCTTGTAACCAGAAATATGGAAGACTTTATTACATGGGTGGATTCATCAAAGATAAAGAGAAAGGTTCTACAGTACAATGACAAGTTGGATGACTATGATGCAATGAACTGA 570 0.4053 MKKIREAMRKLKFHEKKLLKKVNFLEWKREGGHRENYVMRRYHVTGRDDYKKYSSLCRMVQKLVNMLKQMDPKDPFRIEMTDMLLEKLYNIGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1091 189 PANTHER 30S 40S RIBOSOMAL PROTEIN 8 185 IPR022801 GO:0003735|GO:0015935|GO:0019843
Dere05g1091 189 SMART Ribosomal_S4_2 10 113 IPR001912 GO:0019843
Dere05g1091 189 CDD S4 114 182 - -
Dere05g1091 189 ProSiteProfiles S4 RNA-binding domain profile. 114 180 - -
Dere05g1091 189 Gene3D - 114 188 IPR036986 GO:0003723
Dere05g1091 189 SMART s4_6 114 177 IPR002942 GO:0003723
Dere05g1091 189 SUPERFAMILY Alpha-L RNA-binding motif 33 181 - -
Dere05g1091 189 Pfam S4 domain 114 160 IPR002942 GO:0003723
Dere05g1091 189 FunFam U3 small nucleolar ribonucleoprotein IMP3 114 186 - -
Dere05g1091 189 Pfam Ribosomal protein S4/S9 N-terminal domain 10 112 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1091 Dere-ChrDere05 17536479 17549492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1091 70 155 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 5.20e-09 52.0