Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1088 ATGGGATTGGGTTCATTAGCTACGAAGGTCGTGAGACCCACTTCTAGGATGCTCGGTTCCCAGAATCCCGGAAACCTGCTCCTTCGAACCATAGTTTCCAAGCCGGAGCTTCGGAAGCCGGAAGCTGCGGCCGCGCAAGCCCAACCGGAGCCGCCACTGGCCGATCTTCCGCCGCGAACTCCGGTCGCCGGAGCCAGGGTTCACTTCCCCAACCCAGATGATGCCATTGAGGTCTTTGTTGATGGGTACGCAGTCAAAATCCCCAAGGGCATGACTGTTCTCCAGGCATGTGAGGTTGCGGGTGTCGACATTCCTCGGTTTTGCTATCACAGCCGGCTATCGATCGCCGGAAACTGCCGTATGTGTCTCGTTGAAGTGGAGAAGTCTCCTAAGCCTGTTGCTTCCTGCGCCATGCCTGCACTTCCTGGTATGAAAATTAAGACCAACACACCTGTGGCAAAAAAGGCTCGGGAAGGGGTGATGGAATTTTTATTGATGAATCATCCTTTGGACTGTCCAATTTGTGATCAGGGTGGGGAATGTGATCTTCAGGATCAGTCAATGGCATTTGGCTCTGATCGTGGTCGGTTCACTGAAATGAAGAGATCTGTGGTGGATAAAAACCTTGGTCCTTTAGTGAAAACAGTGATGACTCGGTGTATTCAATGTACAAGGTGTGTTAGGTTTGCAACGGAGGTTGCAGGAGTTCAGGATCTTGGCATGCTGGGTCGTGGCAGTGGAGAAGAGATTGGAACATATGTTGAAAAACTTATGACTAGTGAACTTTCTGGAAATGTGATAGATATCTGTCCTGTGGGAGCACTTACTTCAAAGCCTTTTGCATTTAAAGCCCGCAATTGGGAGCTGAAGGGGACAGAGAGCATTGATGTTACTGATGCTGTTGGATCCAATATTCGAATTGATAGCAGAGGACCAGAAGTCATGCGCATTCTACCCCGTTTAAATGAGGACATAAATGAAGAATGGATTTCTGACAAGACTCGCTTTTGTTATGATGGTTTGAAGAGGCAAAGATTAAATGACCCTATGATTCGTGGTCCGGATGGGCGCTTTAAGGCTGTGAGCTGGCGTGATGCCCTTGCTGTGGTTGCAGAGATTGCCCACCAAGTTAAACCAGAAGAAATTGTTGGAATTGCTGGCAAACTTTCTGATGCTGAGTCCATGATGGCACTAAAAGATTTCTTGAACAGAATGGGATCAAATAATGTATGGTGTGAAGGAGTTGGTGTAAATACAAATGCCGATTTGCGTGCTGGGTATCTTATGAATACTAGCATTGCTGGTCTTGAGAAAGCAGATGTTTTCCTGTTGGTTGGAACGCAGCCACGGGTAGAAGCTGCTATGGTTAATGCCAGAATACAGAAGACTGTGAGAGCAACCCAAGCCAAGGTCGGGTACATTGGGCCTGCTACCGATTTCAACTATGATCATCAACATCTTGGTACTGGCCCTCAAACACTACTTGATATTGCCGAGGGTCGACATCCATTTTGCTCCACTATCTCAAATGCCAAAAGCCCTGCCATCATTGTTGGTGCCGGGGTTTTTGAGAGGAAGGACAAGGATGCAATTTTTGCAGCTGTTGAAACCATTGCAAAAAATGGGAAGGTTGTTAGACCTGACTGGAACGGCCTCAACGTATTGCTTCTCCATGCTGCCCAGGCTGCTGCACTTGACCTTGGGCTTGTGCCTCAATCTGAAAACAGCATTGAGTCTGCAAAATTTGTGTATTTGATGGGTGCTGATGATATAAACATAGACGCAATACCAGATGATGCTTTTGTTGTATATCAAGGTCACCACGGGGACAAGAGTGTTTATCGCGCCAACGTCATCTTGCCAGCAGCAGCCTTCAGTGAGAAGGAAGGAACATACGAAAATACTGAAGGATGCACTCAACAAACATTGCCTGCAGTTCCAACAGTTGGTGATGCCAGGGACGATTGGAAGATAATTAGGGCTTTGTCTGAGGTGGCAGGAATGCGATTGCCCTATGATTCAACTGGGGCCGTTCGTGCCCGCATTAGAACTGTCGCTCCAAACCTTGTGCACATGGATGAGAGAGAGCTTGCTACTTTTTCACCTACTCTGAAACCTGACATCACTGGGAAAATGAATTTGACGACGCCATTTGGAGTTGCATTTGAGAATTTCTACATGACTGATTCCATTACCAGGGCATCAAAGATAATGGCGCAATGCAGTGCTATGCTGTTGAAGAAGTGA 2247 0.474 MGLGSLATKVVRPTSRMLGSQNPGNLLLRTIVSKPELRKPEAAAAQAQPEPPLADLPPRTPVAGARVHFPNPDDAIEVFVDGYAVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTNTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGPDGRFKAVSWRDALAVVAEIAHQVKPEEIVGIAGKLSDAESMMALKDFLNRMGSNNVWCEGVGVNTNADLRAGYLMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIQKTVRATQAKVGYIGPATDFNYDHQHLGTGPQTLLDIAEGRHPFCSTISNAKSPAIIVGAGVFERKDKDAIFAAVETIAKNGKVVRPDWNGLNVLLLHAAQAAALDLGLVPQSENSIESAKFVYLMGADDINIDAIPDDAFVVYQGHHGDKSVYRANVILPAAAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDSTGAVRARIRTVAPNLVHMDERELATFSPTLKPDITGKMNLTTPFGVAFENFYMTDSITRASKIMAQCSAMLLKK 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1088 748 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 105 122 IPR000283 GO:0008137|GO:0016020|GO:0042773
Dere05g1088 748 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 280 395 - -
Dere05g1088 748 SUPERFAMILY 2Fe-2S ferredoxin-like 76 148 IPR036010 GO:0051536
Dere05g1088 748 Pfam 2Fe-2S iron-sulfur cluster binding domain 74 150 - -
Dere05g1088 748 SUPERFAMILY 4Fe-4S ferredoxins 149 285 - -
Dere05g1088 748 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 74 152 IPR001041 GO:0051536
Dere05g1088 748 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 289 345 IPR006963 GO:0016491
Dere05g1088 748 FunFam NADH dehydrogenase [ubiquinone] iron-sulfur protein 1 mitochondrial 572 697 - -
Dere05g1088 748 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 287 693 - -
Dere05g1088 748 FunFam NADH-quinone oxidoreductase subunit G 75 197 - -
Dere05g1088 748 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 172 184 IPR000283 GO:0008137|GO:0016020|GO:0042773
Dere05g1088 748 PANTHER RESPIRATORY NITRATE REDUCTASE 145 743 - -
Dere05g1088 748 FunFam NADH-quinone oxidoreductase 354 415 - -
Dere05g1088 748 Pfam NADH-ubiquinone oxidoreductase subunit G, C-terminal 715 741 IPR015405 GO:0016651|GO:0051536
Dere05g1088 748 CDD fer2 76 147 IPR001041 GO:0051536
Dere05g1088 748 FunFam NADH-ubiquinone oxidoreductase 75 kDa subunit 201 278 - -
Dere05g1088 748 Pfam NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 157 194 IPR019574 GO:0016491
Dere05g1088 748 SMART NADH_G_4Fe_4S_3_2 157 197 IPR019574 GO:0016491
Dere05g1088 748 ProSiteProfiles His(Cys)3-ligated-type [4Fe-4S] domain profile. 152 191 IPR019574 GO:0016491
Dere05g1088 748 CDD MopB_Res-Cmplx1_Nad11 293 666 - -
Dere05g1088 748 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 219 229 IPR000283 GO:0008137|GO:0016020|GO:0042773
Dere05g1088 748 Gene3D - 281 399 - -
Dere05g1088 748 Gene3D - 75 197 - -
Dere05g1088 748 NCBIfam NADH-quinone oxidoreductase subunit NuoG 78 662 IPR010228 GO:0016651|GO:0051536
Dere05g1088 748 Gene3D - 201 278 - -
Dere05g1088 748 Gene3D - 580 700 - -
Dere05g1088 748 Pfam Molybdopterin oxidoreductase 345 664 IPR006656 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1088 Dere-ChrDere05 17486834 17492066 Wgd