Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1083 ATGTCTCTGCGGCTGGTTGCAGCAAATTTGTTCAAAAAGTTTCGTTTTCCTTCTCGCAATGCCTATTCTACTTCTGTAGAAACCTCTAATGCGTTGCCCACCTCACTTTCTGGCAAAATTAATGTTTCCCATTGGTATCGGCCTAGAGCATATGGTTGGAGGATTGATCCGAGGGATCCTCGTCTATGGATTGTGATATATGGACATGTTGCATTTATTCTTGGCATTAATGCCAATCCTGTGTTTGCAAAAGATGCATCAACTGAAGCATTTTCTGATAATGACACTGAAAAGGATGACATAGTTGGATTGCGCAAAGTTGAGGATGGCTCTGTAGTATCAAATATACACACATCGAAATGGAGAATATTTACAGATAAAGGGAGAGACTTATTTCTTCAGGGAAAAATAGATGAAGCTGAAAAGCTTTTCATTTCTGCAGTAGAAGAAGCTAAAGAAGGTTTTGGCCAGAGAGATCCACATGTTGCATCTGCATGCAACAATTTGGCTGAGTTGTACAGAGTCAAAAAGGCATTTGACAAGGCAGAACCACTATATTTGGAAGCTATCAATATATTGGAGGAATCATTTGGCCCGGAAGATATACGAGTGGGGGCTGCTGCTCATAACCTTGGGCAGTTCTACCTTGGACAGCGAAAGTTGGAAGATGCTCGTGTTTACTATGCGATGGCTTTGAAGATAAAAAGGCGTGTTTTGGGATATGACCATCCGGACTGTGCTGATACAATGTATCACCTAGGAGTGGTGCTGTATCTTCAAGGAAAAGAAAGGGACGCTGAGGCCTTTATTCAGGACTCTATAAGAATGCTAGAGGAAGGTGGTGAAGGGGAGTCCTTTGTATGCATTAGAAGACTTAGATATCTCTCTCAGATATATATGAAATCACATCGTCTTGCTGATGCTGAGATGGTCCAAAGAAAGATTCTGCATAAATTGGAACTATCAAAGGGATGGAATTCCTTGGACACTGTTGCTGTGGCTGAAAGTTTGGCACTGACTCTGCAAGCATCTAATAATTTAAAAGATTCACAAGAGCTTCTTGAAAGATGTCTTAATGCCCGGAAAGCCTTACTTCCTAGTGACCACATTCAGATTGGTGCAAACCTGCTTCATCTAGCAAGGTGTGTGGTGCTTAACTGCAGCCAACTGCAAAAATGGGATGCTTCTAGGAAAGCTGAGTTTGATAAGGCAAAGCATCATTTGAGCAATTCCATAAGGATTGCACGCCAAGTTTTAGATAAATTATTGAAACAAAAAGTCAACACAAAAAATTACGGTGCACTTGGCCGTTCTAGAAAGGAAAGGCAAGAAGCATTGGTCATACTGTTGCAATCACTCAGTACTCTGGCGTCATTGGAGTTAGCTGAGCAAGATTTGATGGAAACTCAGGATGGGCATATAAATCTTGAGGCTCAGAATGCGCTTCTTCAATGTGTTTCTGCTTACAGGGAGTATGTATCTGAGAAGTCAATTGCTGATGCCCTTGAAATAAAGAACGAGTATCTTTCATGTTTAAAGCGTGCTCAAAACTTGCTTGGTGCTAAATTTGCTGAGGAGCCAACCAATGAAGAGGATTCCAGAAGCTGA 1608 0.4142 MSLRLVAANLFKKFRFPSRNAYSTSVETSNALPTSLSGKINVSHWYRPRAYGWRIDPRDPRLWIVIYGHVAFILGINANPVFAKDASTEAFSDNDTEKDDIVGLRKVEDGSVVSNIHTSKWRIFTDKGRDLFLQGKIDEAEKLFISAVEEAKEGFGQRDPHVASACNNLAELYRVKKAFDKAEPLYLEAINILEESFGPEDIRVGAAAHNLGQFYLGQRKLEDARVYYAMALKIKRRVLGYDHPDCADTMYHLGVVLYLQGKERDAEAFIQDSIRMLEEGGEGESFVCIRRLRYLSQIYMKSHRLADAEMVQRKILHKLELSKGWNSLDTVAVAESLALTLQASNNLKDSQELLERCLNARKALLPSDHIQIGANLLHLARCVVLNCSQLQKWDASRKAEFDKAKHHLSNSIRIARQVLDKLLKQKVNTKNYGALGRSRKERQEALVILLQSLSTLASLELAEQDLMETQDGHINLEAQNALLQCVSAYREYVSEKSIADALEIKNEYLSCLKRAQNLLGAKFAEEPTNEEDSRS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1083 535 Coils Coil 459 479 - -
Dere05g1083 535 Pfam Tetratricopeptide repeat 206 279 - -
Dere05g1083 535 Pfam Tetratricopeptide repeat 127 195 - -
Dere05g1083 535 Gene3D Tetratricopeptide repeat domain 117 283 IPR011990 GO:0005515
Dere05g1083 535 SMART tpr_5 247 280 IPR019734 GO:0005515
Dere05g1083 535 SMART tpr_5 163 196 IPR019734 GO:0005515
Dere05g1083 535 SMART tpr_5 121 154 IPR019734 GO:0005515
Dere05g1083 535 SMART tpr_5 205 238 IPR019734 GO:0005515
Dere05g1083 535 Gene3D Tetratricopeptide repeat domain 284 525 IPR011990 GO:0005515
Dere05g1083 535 SUPERFAMILY TPR-like 242 361 IPR011990 GO:0005515
Dere05g1083 535 Pfam Tetratricopeptide repeat 334 370 - -
Dere05g1083 535 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 528 - -
Dere05g1083 535 SUPERFAMILY TPR-like 117 266 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1083 Dere-ChrDere05 17376355 17401421 Dispersed