Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1073 ATGGGAAGGCAACCCTGCTGCGACAAAGTCGGGTTGAAGAAGGGCCAATGGACTGCAGAGGAGGACAAGATGCTCATCAACTTCATCCTCACCCATGGCCAATGCTGCTGGAGGACTGTTCCTAAGCTTGCAGGGCTTTTGAGGTGTGGCAAGAGTTGCAGGCTGAGATGGACGAACTACCTTAGGCCTGACTTGAAGAGAGGCCTTCTTTCTGAATATGAAGAGAAACTGGTGATTGATCTCCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACCCACATAAAGAAGAAGCTCAAGAAAATGGGCATTGATCCTGTCACCCACAAGCCTCTCTCTGAGCAAAGCCCGAATCCCCCACAAGATCATGAACAGCAGCTTCCTTTGACAGCTAACCTCAAAATTGATCAAAAGCCAGACACCTCGTACGAGTCATCTTCCTTTACTGAATCGAAAGAGGAGGACAAAACTGAGGCATCCCAATTTGACCCAGTGGAGGACATCATGAATGGTTTCTGCACAGATGACGTTCCCATAATGGAGCCCCATGAGATTCTGTTGCCTTCTGCTCCTTCCTCCTCCTCATCATCATCTTCCTCTTCTTCTTCTTCTTCACATCCATCTAACTTCCTTGGAGACCTGCAGATCCCGGACTTTGTGTGGTCTTGTGATTACAGTGGTAATAATGATGATAACAATATCAAGAGCAACATTAGCAGCAGCAGCAGCAGCAATAGCAGTATGGGATTGTGGGATGATGATTTTATGAGCAGTTGGGATTTGCTTATGAATGATGATGATGGTGATAGAAAGATTGATTTTTATTCTCCTCAAGACGAGTATCCAAGAATGGTCATGGATCAAGAATCTTGGGCATATGGGTTATTTTGA 942 0.4533 MGRQPCCDKVGLKKGQWTAEEDKMLINFILTHGQCCWRTVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKLVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSEQSPNPPQDHEQQLPLTANLKIDQKPDTSYESSSFTESKEEDKTEASQFDPVEDIMNGFCTDDVPIMEPHEILLPSAPSSSSSSSSSSSSSSHPSNFLGDLQIPDFVWSCDYSGNNDDNNIKSNISSSSSSNSSMGLWDDDFMSSWDLLMNDDDGDRKIDFYSPQDEYPRMVMDQESWAYGLF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1073 313 FunFam MYB transcription factor 11 67 - -
Dere05g1073 313 MobiDBLite consensus disorder prediction 164 179 - -
Dere05g1073 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere05g1073 313 SMART sant 66 114 IPR001005 -
Dere05g1073 313 SMART sant 13 63 IPR001005 -
Dere05g1073 313 Gene3D - 11 67 - -
Dere05g1073 313 MobiDBLite consensus disorder prediction 149 163 - -
Dere05g1073 313 MobiDBLite consensus disorder prediction 205 226 - -
Dere05g1073 313 CDD SANT 17 61 IPR001005 -
Dere05g1073 313 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 249 - -
Dere05g1073 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere05g1073 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere05g1073 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere05g1073 313 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dere05g1073 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere05g1073 313 Gene3D - 70 143 - -
Dere05g1073 313 MobiDBLite consensus disorder prediction 203 226 - -
Dere05g1073 313 CDD SANT 74 112 IPR001005 -
Dere05g1073 313 FunFam Myb transcription factor 71 133 - -
Dere05g1073 313 MobiDBLite consensus disorder prediction 149 191 - -
Dere05g1073 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1073 Dere-ChrDere05 17189862 17191190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1073 1 313 MYB Transcription Factor Family AT5G16600 49.415 3.18e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1073 Myb_DNA-binding 5.7e-13 CL0123