Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1069 ATGTTCTTTTGCCACTTTGGAATATGTTCTGTGTGCTTTTGCCAGTCTATTCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTTGGCACAAAATTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGATATAAGGGAACTTTTTTCTGAGATTGGAGACTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCAGCTCTTAAACGGTACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCTGAATTGTCTGTATCGGCTCGTGTGAACGTGTCTGGGCTAAATGGGCACAGGAAAAGGACAGTTTTCATGACTCCTGGAGGAGGTCGAACTGGAGGTCCTGCAATGTTCAACCGTGGTGTGGGTTGGGGACGTCGTGGTGGTGGAAGGAGTGGCACTGGGAGTATGCGTGGTCGAGGCCGTGGACGTGCTAGAGGTCGAGGCCGAGGTTGGGGGAAGAGGGAAGGTGTTGACAAGTCTGCAGAGGATCTTGACAAGGAACTGGAAACCTATCATGCCGAGGCCATGCACATTTCGTAA 672 0.4732 MFFCHFGICSVCFCQSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELSVSARVNVSGLNGHRKRTVFMTPGGGRTGGPAMFNRGVGWGRRGGGRSGTGSMRGRGRGRARGRGRGWGKREGVDKSAEDLDKELETYHAEAMHIS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1069 223 SMART rrm1_1 47 119 IPR000504 GO:0003723
Dere05g1069 223 Pfam C-terminal duplication domain of Friend of PRMT1 168 217 IPR025715 -
Dere05g1069 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 116 IPR000504 GO:0003723
Dere05g1069 223 SUPERFAMILY RNA-binding domain, RBD 45 142 IPR035979 GO:0003676
Dere05g1069 223 CDD RRM_THOC4 46 120 - -
Dere05g1069 223 SMART FoP_duplication_2 148 223 IPR025715 -
Dere05g1069 223 Gene3D - 41 122 IPR012677 -
Dere05g1069 223 MobiDBLite consensus disorder prediction 149 204 - -
Dere05g1069 223 Coils Coil 222 223 - -
Dere05g1069 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Dere05g1069 223 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 18 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1069 Dere-ChrDere05 17132532 17135410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1069 45 120 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.01e-09 56.2