Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1052 ATGGTAATTTGGAAAGCTGAAAAAATAAAAAAAGAATTTAAAGAGAAAACTCCATTATTATGGCTTCCGTTTCCCAATTATCTATACCCCTCTGAGCTAACTTTGCTCGCCCTTTCGACCTTTCACTCTCTCACCCGTTTAAAAATTTGTGTTTCAGTGAAGAAATTCGAAAGCACAACCCCGATTCATCGTCACTGCCATGAACGAATTCTGAATCTGATCTGTAGTTTCGTGTGTCTTCTTTTTGTATCTGGAGAGGACAAGATGAAGAGGGAGCACATAGATAGCTGTGCTAGTGCTGCTGTTGGTGGTGGTTTAGGAGCTGAATGCTCATCAATGTCAAGTGGGAAGGTGAAGATGTGGGAGGAAGAACTTGATGCTTCGGGTGGGATGGATGAGTTGCTTGCGGCTTTGGGCTACAAGGTGCGGTCGTCGGACATGGCGGACGTGGCGCAGAAGCTTGAGCAGCTCGAGATGGTTATGGCTACTGCTCAGGAAGATGGGATATCCCATCTTGCTTCTGATACCGTCCACTATGACCCCACCGATCTCCATGGTTGGGTTCAAAGCATGCTCACCGAGCTCAACGGTTCGCCCAATTGTCTCGATCCATCGACGCTGTTGGCGAACCAGCAAATTCATGACCATATTCTGGCTCCGGTCGTCTCCTTCATGACGCCCACCTCTAATTTCTCCAACTCCCTGCAGCAGATCGAGAATCCGTCACACGTTTACAACGATGATTCCGAGTACGACCTCAGAGCAATTCCTGGCATGGCGATGTACCCACAAAGCGAGACGACTCATGATAAAGATAGTAACAACAAGCGACTGAAACCTTCACTTATCGAATCAGCCCCGTCGCCATCGCCGGCGACAGTATTGGAGCACGTACGGCCGGTGATTCTCGTTGACTGTCAAGAAAACGGTGTGCGTCTCGTCCACACCCTCATGGCATGTGCAGAGGCGGTTCAACAGAACGATTTGAAGCTGGCGGATGCGCTTGTGAAGCACGTGGGCTTGCTCGCGACGTCTCAAGTCGGAGCAATGAGGAAGGTAGCTTCCTATTTCGCCCAAGCTTTAGCTCGTCGGATTTACGGAATCTACCCCCTAGATTCCCTCGATCCCTCCTTCTCCGATATGCTCTATATGCATTTCTACGAGTCTTGCCCCTACCTGAAATTCGCCCATTTCACGGCGAACCAAGCCATTCTGGAAGCATTCGCCAACGTTAACAGAGTTCACGTCATCGATTTCGGGCTCAAGCAGGGGATGCAATGGCCAGCATTAATGCAGGCCCTCGCATTACGACCCGGCGGCCCACCTACATTCCGCCTCACCGGAATCGGACCCCCGCAGAAGGATAAAAGTGACGCTCTGCAACAAGTGGGTTGGAAATTGGCACAATTGGCCAAAACAATCGGAGTCCAATTCGAATTCCGCGGCATCGTCTGCAACAGCTTAGCGGATCTCGAACTTTCCCTCATGGAGATCCGACCCGACGAAGTCATCGCTGTGAACTCCGTTTTCGAGCTCCACGGGCTCTTGGCCCGGCCCGGCGCCATCGACAAGGTCTTGAACACGATCAAGGCCATGAATCCGAAGATCGTGACCGTGGTGGAGCAAGAAGCGAACCACAACAGGCCGGTTTTCTTGGATCGGTTCACAGAAGCACTACACTACTACTCAACCCTGTTCGACTCGCTGGAAGGATCGCCTCCGTCAGGGTTAACGCCGCCGAGTCAGGACGTGATGATGACGGAGCTGTATCTTGGGAGACAGATATGCAACGTGGTGGCGTGCAAAGGGTCAGAGCGCGTGGAGCGGCACGAGACACTGAGTCAGTGGAGGGCGAGGTTGGGATCGGCCGGGTTCGACTCAGTTCATCTGGGTTCGAACGCGTTTAAGCAAGCGAGCATGTTATTGGCTGTGTTCGCCGGAGGAGATGGGTACAGGGTAGAGGAGAACAATGGGAGCCTCATGCTGGCGTGGCACACGCGGCCCCTCATAGCCACGTCGGCGTGGAAAATTCCGGCCGGTGAGCTGTAG 2049 0.5251 MVIWKAEKIKKEFKEKTPLLWLPFPNYLYPSELTLLALSTFHSLTRLKICVSVKKFESTTPIHRHCHERILNLICSFVCLLFVSGEDKMKREHIDSCASAAVGGGLGAECSSMSSGKVKMWEEELDASGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMATAQEDGISHLASDTVHYDPTDLHGWVQSMLTELNGSPNCLDPSTLLANQQIHDHILAPVVSFMTPTSNFSNSLQQIENPSHVYNDDSEYDLRAIPGMAMYPQSETTHDKDSNNKRLKPSLIESAPSPSPATVLEHVRPVILVDCQENGVRLVHTLMACAEAVQQNDLKLADALVKHVGLLATSQVGAMRKVASYFAQALARRIYGIYPLDSLDPSFSDMLYMHFYESCPYLKFAHFTANQAILEAFANVNRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQKDKSDALQQVGWKLAQLAKTIGVQFEFRGIVCNSLADLELSLMEIRPDEVIAVNSVFELHGLLARPGAIDKVLNTIKAMNPKIVTVVEQEANHNRPVFLDRFTEALHYYSTLFDSLEGSPPSGLTPPSQDVMMTELYLGRQICNVVACKGSERVERHETLSQWRARLGSAGFDSVHLGSNAFKQASMLLAVFAGGDGYRVEENNGSLMLAWHTRPLIATSAWKIPAGEL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1052 682 Coils Coil 147 167 - -
Dere05g1052 682 Gene3D - 130 195 IPR038088 -
Dere05g1052 682 ProSiteProfiles GRAS family profile. 304 676 IPR005202 -
Dere05g1052 682 Pfam Transcriptional regulator DELLA protein N terminal 132 199 IPR021914 -
Dere05g1052 682 MobiDBLite consensus disorder prediction 263 291 - -
Dere05g1052 682 SMART DELLA_2 132 206 - -
Dere05g1052 682 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 257 672 IPR005202 -
Dere05g1052 682 Pfam GRAS domain family 313 676 IPR005202 -
Dere05g1052 682 FunFam DELLA protein GAI 130 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1052 Dere-ChrDere05 16939682 16941730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1052 117 677 GRAS Transcription Factor Family AT1G14920 59.756 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere05g1052 GRAS 6e-136 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1052 05 16939682 16941730 Dere05g1052 05 16939682 16941730 CCT
Dere05g1052 05 16939682 16941730 Dere05g1052 05 16939682 16941730 ECH
Dere05g1052 05 16939682 16941730 Dere07g0985 07 13358245 13360524 ECH