Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1049 ATGGCGGACGTAATGGTGATGAATGAGATTGAGGCAACGGCGTCGCAGCTTGGAGTCGATCTTTCTACTATTGATCTGGATTCCATTCGCCTTCCGCCAGGCGATGATTTTGGCGTAGTCAGTGATGACGATGATATCTACCAGGAGGAAAATCTGGAGTTTGACTCTGGGTTTGGCAACATTATAGTTGTCGATAACCTCCCAATTGTACTCCTTGAGAAGTTTGAGAAGCTTGAAGGTGTAATTCGTAAAATTTATAGTCAAATTGGTGTGATTAAAGAGGATGGCCTGTGGATGCCCATTGACCATGTTGCTGAGAAAAGTTTAGGTTACTGCTTCATTGAGTATAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAAAAGACACATGGATACAAGTTGGATCGAGCACATGTTTTTTCAGTGAACATGTTTGATGATTTTGACCGGTTTATGAAAGTTCCAGATCTGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAGCATTGGCTTACTGATACAAAAGCCCGCGATCAGTTTGTGATTCGTGCTGGTTCCGATACTGAGGTTTTATGGAATGATGTGAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACGTTTTGGACTGAGAGCTTTGTTCAATGGTCCCCTCTGGGTACATATTTGGCAACAGTTCACAGACAGGGGGCAGCTGTTTGGGGAGGTGCTGCGACCTTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTAAAACTCATTGACTTTTCACTCGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCCAGCAATCCTCGAGATGCTAATAGGGTCGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGGGATTTTAAAGGAAGTGCAGACGATTTTTCAGTTGGAGGTACTGGAGGTGTCACAGGGGTGTCATGGCCTGTTTTCAGATGGGGTGGTGGTAGAGATGATAGGTATTTTGCAAGAATGGGAAAGAATATAATCTCTGTATATGAGACAGAGACCTTTTCTCTTGTCGACAAAAAGTCCTTAAAGGTTGAAAATGTAATGGATTTCAGCTGGTCTCCAACTGATCCAATTCTTGCTCTCTTTGTTCCTGAGATGGGTGGTGGAAACCAACCTGCCAGGGTTAGTCTGGTTCAAATCCCTAGTAAAGAGGAACTTAGGCAGAAAAACCTCTTCAGTGTCAGTGATTGCAAGATGTACTGGCAGAGTAATGGGGACTACCTTGCTGTTAAGGTAGATCGTTACACTAAGACCAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGATATTCCCATTGAAGTTTTGGAGCTTGAGAATAAGAATGACAAGATTATTGCATTTGCTTGGGAGCCAAAAGGTCATAGGTTTGCAGTTATTCATGGTGATAACCCAAAGCCAGATATTAGTTTTTACTCTATGCGGACTGCTCAGAACACAGGCCGGGTTTCAAAGCTTGCTACTTTGAAAGGCAAGCAGGCAAATACTCTGTTTTGGTCACCTGCTGGTCGCTTCATTGTACTTGCTGGGTTGAAAGGCTTCAATGGACAATTAGAATTTTATAATGTTGATGAGCTTGAAACTATGGCAACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTTCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTTAATATATGGTCTTTCAATGGCAAGCTTCTGTATCGTATACTGAAGGATCACTTCTTTCAGTTTTTGTGGCGACCAAGGCCTCCATCTTTCTTGAGTCCAGAAAAAGAGGAAGAGATCGGAAGGAACTTGAAGAAGTATAGTAAGAAGTATGAGGCAGAAGACCAAGATGTGTCGTTGCTGCTCAGTGAGCAGGAGCGTGAGAAGCGAAGAATGATGAAAGAAGAATGGGATAAATGGGTCAATGAATGGAAGCAGTTGCATGAAGAAGAGAAGTTGGAGAGGCAGAAGCTTAGGGACGGTGAAGCCAGTGACGAAGAAGAGGAATACGAAGCTAAGGACATAGAAGTTGAGGAAGTCGTGGATGTATCGGAGGAGGTCCTTCCTTTTGAATATGCTCAAGAGTGA 2160 0.4292 MADVMVMNEIEATASQLGVDLSTIDLDSIRLPPGDDFGVVSDDDDIYQEENLEFDSGFGNIIVVDNLPIVLLEKFEKLEGVIRKIYSQIGVIKEDGLWMPIDHVAEKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVNMFDDFDRFMKVPDLWAPPETKPYAPGENLQHWLTDTKARDQFVIRAGSDTEVLWNDVRHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAATFNRLMRYAHPQVKLIDFSLGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFSVGGTGGVTGVSWPVFRWGGGRDDRYFARMGKNIISVYETETFSLVDKKSLKVENVMDFSWSPTDPILALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYSMRTAQNTGRVSKLATLKGKQANTLFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIGRNLKKYSKKYEAEDQDVSLLLSEQEREKRRMMKEEWDKWVNEWKQLHEEEKLERQKLRDGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEYAQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1049 719 MobiDBLite consensus disorder prediction 677 696 - -
Dere05g1049 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dere05g1049 719 CDD RRM_eIF3B 59 143 IPR034363 -
Dere05g1049 719 Gene3D - 59 143 IPR012677 -
Dere05g1049 719 Gene3D - 175 383 IPR015943 GO:0005515
Dere05g1049 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Dere05g1049 719 Gene3D - 418 619 IPR015943 GO:0005515
Dere05g1049 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Dere05g1049 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dere05g1049 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Dere05g1049 719 SUPERFAMILY RNA-binding domain, RBD 51 137 IPR035979 GO:0003676
Dere05g1049 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Dere05g1049 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Dere05g1049 719 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Dere05g1049 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Dere05g1049 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1049 Dere-ChrDere05 16889444 16894710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1049 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.587 0.0 1178