Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1045 ATGAAAGGGAGTGAGGCTTCCATTGTCTTCCCATGCGAAAGACTTACCATTACCAGCAAATCATCTTTCCCTTCAGTGGGCCCCTGGTCCTCCAACTTGCACCCATTTCATCTTCCTGGGTCGTCTTCTTGTTTTTGGCTTTCCTCAATGGAGAACTTGATGGGTCTGCTCAGAATTCGCGTCCACAGAGGCGTGAATCTTGCTGTCAGAGATGTCGTTAGCAGCGATCCTTACGTCGTCATCAAAATGGGCAAGCAGAAATTGAAGACTCGAGTGGTACCTAAGAATATCAATCCTGAGTGGAATGATGAATTGACTTTATCTGTTTCGGATCCTCGTCTGCCTGTCCTACTTTTTGTATATGACAAGGACAGATTCAGTTTGGATGACAAAATGGGAGAGGCTGAGTTTGAGATTAATACATTTCTTGAAGCTATGAGGATGCAGTTGGGAAGCCTCCCAGATGGAACTATCATTACTAGAATACAACCTAACCGGCAAAACTGTCTTGCTGAAGAGAGCCAAATTGTCTGGAAAGATGGCAGAGTTGTTCAAAACATGGTTCTTAGACTAAGGAATGTGGAGTCTGGGGAAGTGGAGCTTCAATTCCATTGGATTGACATTCCTGGTTCCAGGGGTCTGTAG 645 0.4496 MKGSEASIVFPCERLTITSKSSFPSVGPWSSNLHPFHLPGSSSCFWLSSMENLMGLLRIRVHRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVPKNINPEWNDELTLSVSDPRLPVLLFVYDKDRFSLDDKMGEAEFEINTFLEAMRMQLGSLPDGTIITRIQPNRQNCLAEESQIVWKDGRVVQNMVLRLRNVESGEVELQFHWIDIPGSRGL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1045 214 ProSiteProfiles C2 domain profile. 38 153 IPR000008 -
Dere05g1045 214 Gene3D C2 domain 53 209 IPR035892 -
Dere05g1045 214 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 52 212 IPR044562 -
Dere05g1045 214 CDD C2_ArfGAP 55 197 - -
Dere05g1045 214 Pfam C2 domain 55 145 IPR000008 -
Dere05g1045 214 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 179 IPR035892 -
Dere05g1045 214 SMART C2_3c 56 151 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1045 Dere-ChrDere05 16803483 16806737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1045 87 214 C2H2 Transcription Factor Family AT1G70790 57.692 2.93e-49 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1045 05 16803483 16806737 Dere05g1045 05 16803483 16806737 ECH
Dere09g2215 09 32001878 32006685 Dere05g1045 05 16803483 16806737 ECH