Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1044 ATGAAGAAGAATCCAAGGTTGAGGAAAGGTTCGTGGACAGAAGAGGAAGACAATCTTCTCAGGGCTTGCATTCAAGAGTACGGCAAGGGAAAATGGCATCTAGTTCCTCGACGAGCTGGTTTGAAGAGATGCAGGAAAAGCTGTAGAATGAGGTGGTTGAATTATCTAAAACCCGACATCAACAGAGGAAACTTCACTGAGGACGAGGTTGATATGATTGGAAGGTTCCATAAACTTCTCGGGAACAGGCATGTGTGTTCTTGTATATCTGTGTTTCCTGGAAGAACAGCTAATGACGTAAAGAACTTCTGGTACACCAACATGCGCCCTGAAAAAGAAGATAATCACAAGAAGATCATAGCAAAAGATCAGGTGAAGCCTGAGGAGACCGCAAAGGTGAAACCCCACGTGGTGATAAAACCTCAGCCTCATACTTTCTCAAAGAATTCTCCATGGTTGAGGAACAAGTTTCTTTCTGCAAATGAAAGCGGAAATGCTAGTACTTCTACTGCTACTACTGCAACACCAGCATTAGAGGCTGCAAACGAAGATGCTATGAAACAGGGTATGGCACAACAGCTAGGTCTTGCTAGTATTCCAGACACAGATCAGTCTGATGAGTGGTGGGAGAATTTATTGAACATGGAAGTCGATGACCAGTGGCTAGAGGGGAGTTCTATGAAGGACTTTTTGGAGCTAAACTCTGAAAATGGAGGGTTTCTCTGGGGAAGGCCAGGGTTGTTTGAGCGACTCTTCATGGAATGA 765 0.4444 MKKNPRLRKGSWTEEEDNLLRACIQEYGKGKWHLVPRRAGLKRCRKSCRMRWLNYLKPDINRGNFTEDEVDMIGRFHKLLGNRHVCSCISVFPGRTANDVKNFWYTNMRPEKEDNHKKIIAKDQVKPEETAKVKPHVVIKPQPHTFSKNSPWLRNKFLSANESGNASTSTATTATPALEAANEDAMKQGMAQQLGLASIPDTDQSDEWWENLLNMEVDDQWLEGSSMKDFLELNSENGGFLWGRPGLFERLFME 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1044 254 Gene3D - 9 61 - -
Dere05g1044 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 191 - -
Dere05g1044 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 112 IPR017930 -
Dere05g1044 254 Gene3D - 63 137 - -
Dere05g1044 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Dere05g1044 254 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Dere05g1044 254 FunFam Myb transcription factor 9 61 - -
Dere05g1044 254 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Dere05g1044 254 SUPERFAMILY Homeodomain-like 5 104 IPR009057 -
Dere05g1044 254 SMART sant 61 110 IPR001005 -
Dere05g1044 254 SMART sant 8 58 IPR001005 -
Dere05g1044 254 CDD SANT 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1044 Dere-ChrDere05 16790314 16791281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1044 1 217 MYB Transcription Factor Family AT1G66370 41.410 7.91e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere05g1044 Myb_DNA-binding 5.5e-15 CL0123