Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1042 ATGGAGGAGAATCCAGGGTTGAGGAAAGGTACGTGGACAGAAGAGGAAGACAATCTTCTCAGGACTTGCATTCAAGAGTATGGCGAGGGAAAATGGCATCTAGTTCCTCGACTAGCTGGTTTGAAGAGATGCAGGAAAAGCTGTAGAATGAGGTGGTTGAATTATCTAAAACCCGACATCAACAGAGGAAACTTCACTGAGGACGAGGTTGATATGATTGGAAGGTTCCATAAACTTCTCGGGAACAGGCATGTGTGTTCTTGTATATCTATATGGTCAGTGATTGCTGCAAGGCTTCCTGGAAGAACAGCTAATGACGTAAAGAACTTCTGGTACACCAACATGCGCCCTGAAAAAGAAGATAATCACAACAAGATTATAGCAAAAGATCAGGTGAAGCCTGAGGAGACCGCAAAGGTGAAACCCCACGTGGTGATAAAACCTCAGCCTCATACTTTCTCAAAGAATTCTCCATGGTTGAGGAACAAGTTTCTTTCTGCAAATGAAAGCGGAAATGCTAGTACTTCTACTGCTACTACTGCAACACCAGCATTAGAGGCTGCAAACGAAGATGCTATGAAACAGGGTATTGCAACCCAGCTAGGTCTTGCTAGTATTCCAGACACAGATCAGTCTGATGAGTGGTGGGAGAATTTATTGAACATAGAAGTCGATGACCAGTGGCTAGAGGGGAGTTCTATGAAGGACTTTTTGGAGCAAGACTCTCTGAAAATGGAGGGTTTCTCTGGGGAAGGCCAGGGTTGTTTGAGCGACTCTTCATGGAATGATAACCTTTGGGATAATCCTCCTGCTTCTGGAGTTTAG 825 0.4448 MEENPGLRKGTWTEEEDNLLRTCIQEYGEGKWHLVPRLAGLKRCRKSCRMRWLNYLKPDINRGNFTEDEVDMIGRFHKLLGNRHVCSCISIWSVIAARLPGRTANDVKNFWYTNMRPEKEDNHNKIIAKDQVKPEETAKVKPHVVIKPQPHTFSKNSPWLRNKFLSANESGNASTSTATTATPALEAANEDAMKQGIATQLGLASIPDTDQSDEWWENLLNIEVDDQWLEGSSMKDFLEQDSLKMEGFSGEGQGCLSDSSWNDNLWDNPPASGV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1042 274 ProSiteProfiles Myb-like domain profile. 57 115 IPR001005 -
Dere05g1042 274 SUPERFAMILY Homeodomain-like 6 111 IPR009057 -
Dere05g1042 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Dere05g1042 274 MobiDBLite consensus disorder prediction 253 274 - -
Dere05g1042 274 SMART sant 8 58 IPR001005 -
Dere05g1042 274 SMART sant 61 117 IPR001005 -
Dere05g1042 274 CDD SANT 11 56 IPR001005 -
Dere05g1042 274 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Dere05g1042 274 MobiDBLite consensus disorder prediction 248 274 - -
Dere05g1042 274 Pfam Myb-like DNA-binding domain 62 113 IPR001005 -
Dere05g1042 274 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Dere05g1042 274 Gene3D - 63 144 - -
Dere05g1042 274 CDD SANT 64 115 IPR001005 -
Dere05g1042 274 FunFam Myb transcription factor 9 61 - -
Dere05g1042 274 Gene3D - 6 62 - -
Dere05g1042 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 119 IPR017930 -
Dere05g1042 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1042 Dere-ChrDere05 16761694 16762691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1042 1 224 MYB Transcription Factor Family AT1G66370 43.348 8.52e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1042 Myb_DNA-binding 1.1e-09 CL0123