Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1033 ATGGCGCTTGAGTACCACAAGTCTGTGCTTGAGGAAGAAGATGGGTTCAGCAACGGTTCTGCCATATCCCATTCTCCTCCTCTGTGTGGGGGTGAAAATGGGTATGTTTATAAGGCCCCAAACTGTCATCCTGAGGAAGCACAATCTCTCATCAATTTCAAAGCCAACGGTGGGTACTGTAATCTCATAGATGGGGTTGAATCTTTGCTTAGCTTTCAGCAGAAAGAGTACTGTGTGTGGGAGACTAGTAGTTCACATCATCCAAGATTGATTCAGGATTTCAATTGCATTCAAACTAGTAGTGGCTATGGAGGTTCCATAGCCAATAATGGTGCAAAGGATAAGCAGCAGCAAGGTGAGAGTTCATACGGGTGGCTATACTCTGAACCAAATATTCCTTCTGATAATAGCCTCCATGATTCTTCAGGAACAAAAGAAGCATCCACCCATAAGCGCCTTTCTACGGGAGAGAGCATGCAAGCCTCGAAGAGGCAATGCACTACTAGTGCTGCTGCAAGTAAAACGCCAAAACCAACAAAGTCAAGCCCATCTAAGGATCCTCAAAGTATTGCAGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGACTCAAAATACTACAAGAACTGGTTCCCAATGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAGGCAATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCAGTCCAAGGTGGAAAGGCACCTGATATTACTCAAGTAAAGGAAGCCATTGATGCCATTCTTTCATGCCAAAGAGACAGAAATTCAACCTCAAAGTAG 834 0.4388 MALEYHKSVLEEEDGFSNGSAISHSPPLCGGENGYVYKAPNCHPEEAQSLINFKANGGYCNLIDGVESLLSFQQKEYCVWETSSSHHPRLIQDFNCIQTSSGYGGSIANNGAKDKQQQGESSYGWLYSEPNIPSDNSLHDSSGTKEASTHKRLSTGESMQASKRQCTTSAAASKTPKPTKSSPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDITQVKEAIDAILSCQRDRNSTSK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1033 277 CDD bHLH_AtIND_like 184 246 - -
Dere05g1033 277 Gene3D - 178 240 IPR036638 GO:0046983
Dere05g1033 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 241 IPR045843 GO:0003700|GO:0006355
Dere05g1033 277 FunFam Transcription factor bHLH83 181 240 - -
Dere05g1033 277 MobiDBLite consensus disorder prediction 107 143 - -
Dere05g1033 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 242 IPR036638 GO:0046983
Dere05g1033 277 MobiDBLite consensus disorder prediction 107 195 - -
Dere05g1033 277 Pfam Helix-loop-helix DNA-binding domain 190 233 IPR011598 GO:0046983
Dere05g1033 277 MobiDBLite consensus disorder prediction 153 189 - -
Dere05g1033 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Dere05g1033 277 SMART finulus 189 238 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1033 Dere-ChrDere05 16647635 16649067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1033 48 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 53.617 1.51e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g1033 HLH 8.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1033 05 16647635 16649067 Dere05g1033 05 16647635 16649067 CCT
Dere05g1033 05 16647635 16649067 Dere05g1033 05 16647635 16649067 ECH