Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1032 ATGGACATTTCTTCTTCTCCTTCCTCTTCTTCCTCCTCCGACGGTCTTTGCTCCGATGCGAATCTCGAAGCCGATACTCCCCGAACCCCTCTAGCCGTCCGCCGAGCCCTCCAGCTTCTTCAATCGGACGACCCCGATTTGAAGCTCCAAGCCGCACGTGATATTCGGCGCCTTACCAAGACCTCCCAGCGCTGTCGCCGCCAACTCTCTGAAGCTGTCGGTCCACTCGTTTCTATGCTCCGAGACGACTCTCTCGAGTCGCACGAACCGGCTCTTCTCGCCTTGCTTAATCTTGCCGTCAAAGACGAAAAGAATAAAATCAGCATTGTGGAAGCGGGTGCTTTAGAACCAATAATTACTTTCCTCAAGTCACAAAATATAAATCTGCAAGAGTACGCAACTGCATCTCTGCTCACTCTATCTGCCTCTGCAACCAACAAGCCAATCATTTATGCTTCTGGAGCCATTCCTCCTCTTGTGGAGATCCTTAGGGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAATTTATCCACCCACCCTGACAATCTACGCACCATTCTTGAAACAAATCCAATCCCTTTCATAGTTGATATTCTCGAAACCTGTAAAAAATCCTCAAAAACAGCTGAGAAATGCTGTGCTTTGATAGAATCCTTGGTTGCTTTTGATGAGGGGAGGACTGCCTTGACATCTGAAGAAGGTGCAATTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCAATCTCCAGAGTAGGGAGCACGCAGTTGGAGCGTTGTTGACGATGTGTGAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGCGTCATTCCAGGGCTGCTTGAGCTTACCGTTCAAGGAACTCCCAAGTCTCAGTTAAAAGCACGTAGCCTATTGCAGCTACTAAGAGAATCTCCTTATCCCAGATCTGAAATTCAACCTGACACTCTTGAGAACATAGTATGCAATATTATATCCCAGATTGATGGGGATGATCAGTCTAGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCTCTAGTGTGCACCCCGACGAGTGATCTGCCAATTGCTAGCTGTGCTTCTGAAGTATCTTCAAAATGA 1167 0.4713 MDISSSPSSSSSSDGLCSDANLEADTPRTPLAVRRALQLLQSDDPDLKLQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRDDSLESHEPALLALLNLAVKDEKNKISIVEAGALEPIITFLKSQNINLQEYATASLLTLSASATNKPIIYASGAIPPLVEILRDGSPQAKADAVMALSNLSTHPDNLRTILETNPIPFIVDILETCKKSSKTAEKCCALIESLVAFDEGRTALTSEEGAILAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARSLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSSKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTSDLPIASCASEVSSK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1032 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Dere05g1032 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 113 IPR000225 GO:0005515
Dere05g1032 388 Gene3D - 228 368 IPR011989 -
Dere05g1032 388 SMART arm_5 227 268 IPR000225 GO:0005515
Dere05g1032 388 SMART arm_5 102 142 IPR000225 GO:0005515
Dere05g1032 388 SMART arm_5 61 100 IPR000225 GO:0005515
Dere05g1032 388 SMART arm_5 143 183 IPR000225 GO:0005515
Dere05g1032 388 SMART arm_5 184 226 IPR000225 GO:0005515
Dere05g1032 388 PANTHER U BOX DOMAIN-CONTAINING 17 316 - -
Dere05g1032 388 FunFam U-box domain-containing protein 4 18 369 - -
Dere05g1032 388 SUPERFAMILY ARM repeat 36 337 IPR016024 -
Dere05g1032 388 Gene3D - 30 227 IPR011989 -
Dere05g1032 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Dere05g1032 388 MobiDBLite consensus disorder prediction 1 19 - -
Dere05g1032 388 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Dere05g1032 388 Pfam Armadillo/beta-catenin-like repeat 103 141 IPR000225 GO:0005515
Dere05g1032 388 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1032 Dere-ChrDere05 16616990 16620351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1032 33 310 U-box Gene Family AT2G23140 34.643 1.17e-41 153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1032 05 16616990 16620351 Dere05g1032 05 16616990 16620351 CCT
Dere05g1032 05 16616990 16620351 Dere05g1032 05 16616990 16620351 ECH