Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1029 ATGAGAAGGCCTTGCTGTGACAAAGAAGACACGAACAAAGGGGCATGGTCAAAGCAAGAAGACCAAAAGCTCATTGATTATATCCAAACTCATGGCGAAGGCTGCTGGCGTTCCCTTCCCAAAGCTGCAGGGTTGCATCGATGTGGCAAGAGTTGCAGGTTGAGATGGATAAATTATTTAAAACCAGATATCAAACGTGGAAACTTCAGCCAAGATGAAGAAGACCTTATCATTAAGCTCCACGCCCTCCTTGGCAACCGGTGGGCACTGATAGCTGGAAGGTTGCCGGGGCGGACAGACAATGAGATAAAGAATTACTGGAATTCTCACATTCGGAGAAAGCTAATAAAGATGGGGATCGATCCTGATAACCATAAGCTTCACCTTCATCGAAGCTTTCCTCCTGCCCTTCCTGTTTCTGCAAATGCTGCTCCTGCAAGTACATCTTCTGGGTCCTTCAAGGATGACCCGGCCCACTTGAATCTTGACCTCACTATTGCTTTTCCTCCTCGCACGCCAAAACCTACTTCTGCTGAGTCCTCCAAGAATAACGTTGATAATGGCCATTCAGCTCCTGCCCTTAATCTATTTGATTAA 597 0.4657 MRRPCCDKEDTNKGAWSKQEDQKLIDYIQTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLKPDIKRGNFSQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEIKNYWNSHIRRKLIKMGIDPDNHKLHLHRSFPPALPVSANAAPASTSSGSFKDDPAHLNLDLTIAFPPRTPKPTSAESSKNNVDNGHSAPALNLFD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1029 198 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Dere05g1029 198 MobiDBLite consensus disorder prediction 174 190 - -
Dere05g1029 198 FunFam MYB-related transcription factor 12 65 - -
Dere05g1029 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dere05g1029 198 CDD SANT 68 111 IPR001005 -
Dere05g1029 198 FunFam MYB transcription factor 67 128 - -
Dere05g1029 198 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere05g1029 198 CDD SANT 15 60 IPR001005 -
Dere05g1029 198 SMART sant 65 113 IPR001005 -
Dere05g1029 198 SMART sant 12 62 IPR001005 -
Dere05g1029 198 MobiDBLite consensus disorder prediction 166 198 - -
Dere05g1029 198 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dere05g1029 198 Gene3D - 13 65 - -
Dere05g1029 198 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dere05g1029 198 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Dere05g1029 198 Gene3D - 68 131 - -
Dere05g1029 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dere05g1029 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1029 Dere-ChrDere05 16571472 16573603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1029 2 196 MYB Transcription Factor Family AT4G38620 55.556 3.29e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1029 Myb_DNA-binding 1.7e-14 CL0123