Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1023 ATGGGTTGCTGCCTTAGTGCGAGGATCAAAGCTGAAAGCCCTCCACGCAAGGCTTTGGATTCAAACTATGATAGCAAAGAAGAGGATGGTTTGAGTGGTATAAGCAGCAGCAAAGTCTCCATTCCCTCGGTGCCTCCAACTCCTCGGACTGAGGGTGAGATCTTGCAGTCCCCCAATTTGAAGAGTTTCAGCTATAGTGAACTAAAAACAGCTACGAGGAACTTTCGTCCAGACAGTGTGGTAGGTGAAGGTGGGTTTGGTAGTGTATTTAAGGGGTGGATTGATGAGCAGTCACTTGCACCTTCTAGACCGGGCTCTGGGATTGTCATTGCTGTGAAGAAGCTTAACCAAGATGGCTTCCAGGGACACAGTGAATGGTTGACAGAAATAAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAATTGATTGGCTACTGCTTAGAGGATGACCAACGGATTTTGGTATATGAGTTTTTGACCAAAGGCAGCTTGGATAATCATTTATTCAGGAGGGCATCTCATGTTGAGCCACTTTCTTGGAGCATCCGTATGAAAGTTGCCCTTGATGCTGCTAAGGGTCTTGCATTTCTTCATAGTGATGAAGTAAAAGTGATATATCGAGACTTAAAAGCTTCTAATATCTTGCTTGATTCGAACTATAATGCAAAACTATCGGATTTTGGGTTGGCAAAGGACGGACCAGTAGGTGATAAGAGCCATGTCTCTACAAGGGTCATGGGCACCTACGGCTATGCTGCTCCTGAATATATGGCCACAGGCCACTTAACCAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTTCTTGAAATTCTATCAGGCAAACGTGCGTTGGACAATAACAGGCCAACCAGGGAACATAATTTAGTTGAATGGGCCAAGCCTTACCTTTCAAGCAAACGGCGGATTTTCCAAGTCATGGATGCTCGTATCGAAGGCCGGTACCCAGTGCGCGAAGCAATGAAAGTAGCTAGCATTGCAATTCAATGCCTGTCTGTAGAACCCAGGTTTAGACCAACCATGGCCGAGGTTGTAAGAGCATTGGAACAACTTCAGGATTCCAGTGATACAGGTAGCTCAAGCAGCAGCAGCAGTGGTCATAAACAGCGTAAGAGAAGAATGAATGGATCTTTAAATGGGGTAAGTACTTCTGATCCCAGATCTTCTGCTTCTCCTCTTCCCACGTGA 1215 0.456 MGCCLSARIKAESPPRKALDSNYDSKEEDGLSGISSSKVSIPSVPPTPRTEGEILQSPNLKSFSYSELKTATRNFRPDSVVGEGGFGSVFKGWIDEQSLAPSRPGSGIVIAVKKLNQDGFQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRILVYEFLTKGSLDNHLFRRASHVEPLSWSIRMKVALDAAKGLAFLHSDEVKVIYRDLKASNILLDSNYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEILSGKRALDNNRPTREHNLVEWAKPYLSSKRRIFQVMDARIEGRYPVREAMKVASIAIQCLSVEPRFRPTMAEVVRALEQLQDSSDTGSSSSSSSGHKQRKRRMNGSLNGVSTSDPRSSASPLPT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1023 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Dere05g1023 404 MobiDBLite consensus disorder prediction 359 404 - -
Dere05g1023 404 MobiDBLite consensus disorder prediction 1 53 - -
Dere05g1023 404 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
Dere05g1023 404 MobiDBLite consensus disorder prediction 384 404 - -
Dere05g1023 404 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1023 404 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Dere05g1023 404 MobiDBLite consensus disorder prediction 359 374 - -
Dere05g1023 404 CDD STKc_IRAK 81 360 - -
Dere05g1023 404 FunFam Probable serine/threonine-protein kinase PBL8 161 379 - -
Dere05g1023 404 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Dere05g1023 404 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
Dere05g1023 404 SMART serkin_6 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1023 404 MobiDBLite consensus disorder prediction 13 27 - -
Dere05g1023 404 Gene3D Transferase(Phosphotransferase) domain 1 161 384 - -
Dere05g1023 404 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Dere05g1023 404 PANTHER OS01G0588500 PROTEIN-RELATED 39 361 - -
Dere05g1023 404 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1023 Dere-ChrDere05 16486573 16490591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1023 53 365 Glycoside Hydrolase AT3G07070 50.000 4.93e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere05g1023 PK_Tyr_Ser-Thr 9.3e-49 CL0016