Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1018 ATGTTAAGAACTTCGAAGCTTTTTTGCAGAGGCGATAAGATGCGGAGGTACAGTCCAGCATACTATAGTCCTCCTCGGAGAGGATACGGTGGTGGAGGAAGAAGCCCTCCTAGGAGGGGATACGGTGGAGGGAGACGCAGGGAACAAAATCATGGTAGCCTTTTGGTTCGGAATATTCCTCTCGATTGCCGATCTGAGGAACTTCGGGTTCCATTTGAGCGATTCGGACCTGTTCGGGATGTCTACATACCAAAGGACTATTACACTGGAGAACCCCGCGGATTTGCATTTGTGCAGTTTGTTGATCCTTATGATGCCTCAGAAGCACAGTACCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTTGTTGTTGCTGCAGAGACACGGAAAAGACCAGAGGAGATGCGTCAGAAAGCAAGGATCAGAGGACCAGTGAGCTATGGGGGACGAAGGTCAACTTATCATGGACGATCTCGATCTCGCTCAGTTTCTAGATCACGTTCCCCTCGTTATCGCTCTGGTTCTAGAAGCCGATATCACTCAAGGTCCTATTCTCCTGCCCCAAGACGGCAAGGTGACTATTCTGTTTCCCCTAGAAGGCACGCAGTGCACCCTAGATCGCCAAGAGGTCCTCCTGGGGAGCGTGATGGTGATCACAAGCGCAGGTCATATTCTCCAGGTTATGGCAATGGCCCTGATTACGATCAAAGCAATGGATATGATGAGAAACCTATTTATGATTCTGAGGCTGCACACGTGGCAGATGAGATGGTTGGCTGTCTTCTGTATAATTCCATGAATATATAA 816 0.4841 MLRTSKLFCRGDKMRRYSPAYYSPPRRGYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVVAAETRKRPEEMRQKARIRGPVSYGGRRSTYHGRSRSRSVSRSRSPRYRSGSRSRYHSRSYSPAPRRQGDYSVSPRRHAVHPRSPRGPPGERDGDHKRRSYSPGYGNGPDYDQSNGYDEKPIYDSEAAHVADEMVGCLLYNSMNI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1018 271 SMART rrm1_1 53 126 IPR000504 GO:0003723
Dere05g1018 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Dere05g1018 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Dere05g1018 271 MobiDBLite consensus disorder prediction 19 49 - -
Dere05g1018 271 MobiDBLite consensus disorder prediction 210 226 - -
Dere05g1018 271 SUPERFAMILY RNA-binding domain, RBD 49 159 IPR035979 GO:0003676
Dere05g1018 271 MobiDBLite consensus disorder prediction 157 180 - -
Dere05g1018 271 MobiDBLite consensus disorder prediction 131 246 - -
Dere05g1018 271 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 45 186 - -
Dere05g1018 271 Gene3D - 27 144 IPR012677 -
Dere05g1018 271 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1018 Dere-ChrDere05 16407649 16413286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1018 20 115 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 1.85e-09 55.5