Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1017 ATGGCGATTGGGTTCATGGAGGTGTTGCTTGTGAAAGTTAAGGGGCTTCAAGACATTGATATCTTTGCTCGTATGGATCCAGACGTTCTGATACAATACAAAGGCCAAGAGCACAAGAGTAGTGTATTTCGTGGGGGACGAAGCAATCCAGTGTGGAATGAGAAATTTGTATTCAGAGTAGAGTACCCTGGATCAGGCGACCAATACAAGCTCATCCTTAAAATCATGGACAAGGACACATTTTCTTCGGATGACTTTGTTGGCCAAGCCATGAAGATGAGGATTCTGTTGAGGAAGACAGTGAAGGATGGAAGGAAAGTGACTACTAGTTATCAGATGTAG 342 0.4357 MAIGFMEVLLVKVKGLQDIDIFARMDPDVLIQYKGQEHKSSVFRGGRSNPVWNEKFVFRVEYPGSGDQYKLILKIMDKDTFSSDDFVGQAMKMRILLRKTVKDGRKVTTSYQM 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1017 113 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Dere05g1017 113 Gene3D C2 domain 5 113 IPR035892 -
Dere05g1017 113 Pfam C2 domain 7 90 IPR000008 -
Dere05g1017 113 PANTHER C2 DOMAIN-CONTAINING 3 91 - -
Dere05g1017 113 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Dere05g1017 113 SMART C2_3c 5 109 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1017 Dere-ChrDere05 16401827 16404472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1017 3 90 C2H2 Transcription Factor Family AT4G21160 31.818 2.01e-07 45.8