Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1007 ATGCCTTCGGGGACATCATCTTCTTATTGGTGCTACAGATGCAGTCGATTCGTGAGGGTACGGGCGCAGGGGCAGGACATGGTGGTTTGTCCGGACTGCGAGAGTGGATTTGTGGAAGAGATTGAACACATGCCTCGGCCTTTCCCCGTCGATTCGCGGCGGAGGAGGTTCCCTGCAGCGGCGATGTACATGATCGGCAACCACCCCAATCCTGAGCAGAATCTTCGTCCTGCTCTGCGGAGGGCTCGCCGGAGCGGAGGCGATCCTACTAATTATAATCCGGTCATCGTTCTCCGTGGATCACCACCCGGGTCTGGTCATGACGGCGGCGGCAACGGTGGAGAGGGCCGCGGGTTCGAGCTTTACTACGATGACGGCGCCGGTTCTGGTCTTCGGCCTTTGCCTCCGAACATGTCGGAGATGCTTCTGGGATCTGGATTCGACAGGCTTTTGGAACAGCTTTCTCAGATTGAAATGAACGGTATTGCGCGATACGAGCCCCGTCCTGTTTCAAAAGCCGCCATTGATTCATTGCCTACGATCGAGATTCATGAGAGTCATTTGGCGACGGAATCACACTGCGCCATCTGTATGGAGCCTTTCGAACTGGGCACAACGGCTCGCGAAATGCCCTGCAAACACATTTACCATTCGGATTGCATTTTGCCATGGCTGGCGATTCGCAATTCTTGCCCTGTTTGCCGTCATGAACTGCCAGTAGACACAGAGAACGTGAACCCCCCCGTTTCTGGGCACTCCCTTTCATGGAACGACGATGACAATGTGGGATTGACGATCTGGAGGCTCCCTGGTGGTGGGTTCGCGGTGGGCAGGTTCACTGGTGGGATAAGAGGTTCTTCTGATCGTGAGCTTCCTGTTGTGTACACAGAAATGGATGGAGGGTTTCGAAACGGCGGTGAACCTAGGAGGGTGACTTGGTCGTCCACAGAGGATCGAGGAAGAGAGAATGGTGGTGGAGGATTGCGCAAAATGTTTCGAAATCTGTTTGGTTGCTTTTCATGTGGAGTTCAAGCTCAACCCTCTGCTTCTACTTCCTATTCTTCTTCTTCTTCTCCAGAACCTCGACCCTTAAGGAGGATTGCATCTCGTTCTCGTCCCAACATGAGTGCCTCTATACGTTCTCGAAGGACCTGGTCTACAGATGGCAACAATGGAACGAGACCTTGGTGA 1191 0.5374 MPSGTSSSYWCYRCSRFVRVRAQGQDMVVCPDCESGFVEEIEHMPRPFPVDSRRRRFPAAAMYMIGNHPNPEQNLRPALRRARRSGGDPTNYNPVIVLRGSPPGSGHDGGGNGGEGRGFELYYDDGAGSGLRPLPPNMSEMLLGSGFDRLLEQLSQIEMNGIARYEPRPVSKAAIDSLPTIEIHESHLATESHCAICMEPFELGTTAREMPCKHIYHSDCILPWLAIRNSCPVCRHELPVDTENVNPPVSGHSLSWNDDDNVGLTIWRLPGGGFAVGRFTGGIRGSSDRELPVVYTEMDGGFRNGGEPRRVTWSSTEDRGRENGGGGLRKMFRNLFGCFSCGVQAQPSASTSYSSSSSPEPRPLRRIASRSRPNMSASIRSRRTWSTDGNNGTRPW 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1007 396 Pfam Ring finger domain 193 235 IPR001841 -
Dere05g1007 396 MobiDBLite consensus disorder prediction 304 326 - -
Dere05g1007 396 CDD RING-H2_RNF181 194 238 - -
Dere05g1007 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 93 239 - -
Dere05g1007 396 MobiDBLite consensus disorder prediction 312 326 - -
Dere05g1007 396 SUPERFAMILY RING/U-box 174 248 - -
Dere05g1007 396 MobiDBLite consensus disorder prediction 348 362 - -
Dere05g1007 396 Pfam Protein of unknown function (DUF1117) 262 359 IPR010543 -
Dere05g1007 396 SMART ring_2 194 234 IPR001841 -
Dere05g1007 396 MobiDBLite consensus disorder prediction 348 396 - -
Dere05g1007 396 MobiDBLite consensus disorder prediction 371 396 - -
Dere05g1007 396 Pfam zinc-ribbon 8 41 IPR039525 GO:0061630
Dere05g1007 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Dere05g1007 396 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Dere05g1007 396 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1007 Dere-ChrDere05 16218559 16219749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1007 133 244 C3H Transcription Factor Family AT5G01980 43.750 1.88e-23 100