Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0993 ATGCACAAGTACAAGCTTAAGACAGCGACAGGGTTTGGATCTTCATGCGGAGCATGTAAGTTCCTCAGGAGAAAGTGTACGGATGACTGTATATTCGCCCCTTACTTCTCCTATGACCAGGCTGCAACACATTTTGCAGCAGTACACAAGGTATTTGGTGCCAGTAACGTCTCTAGGCTACTGCTACACCTACCGGTCCATAATAGAAGCGATGCCGCCATCACTGTATCCTACGAAGCACTGGCTCGGATGCAGGATCCTATATATGGTTGTGTTGCTCACATCTTTGCACTGCAGCAACAGGTTGCAAGCTTGCAAGAGGAAATCGTTAATCTTGGGAATGCTATGGCCAATTCCACTGTTGGTGTTGCCGGTTGTGGTGGTAGTTCTCAAGCCTCTACAAGCAGAAACTCAAATGGGATAGAATTTTCTTGGCAGCAGGATGCAACAAGTACACAATTTTATCATACTCAACTGGCTAATTTACTTTCTCACCAAGGAAGTGCTGCAACCGACCAAGGCTCGGAAGGACAGGTGGACTTAGAGTTTTCCAATGCTCTTCAATTGGAAGACCAGGTATTTCAGGAGTCCGATCCTAATCCATTTGAGACGCTCCTGTCAGGAATTGACCAAGAGGTTTTCATCAATCATCCATGGTCCTAA 663 0.4615 MHKYKLKTATGFGSSCGACKFLRRKCTDDCIFAPYFSYDQAATHFAAVHKVFGASNVSRLLLHLPVHNRSDAAITVSYEALARMQDPIYGCVAHIFALQQQVASLQEEIVNLGNAMANSTVGVAGCGGSSQASTSRNSNGIEFSWQQDATSTQFYHTQLANLLSHQGSAATDQGSEGQVDLEFSNALQLEDQVFQESDPNPFETLLSGIDQEVFINHPWS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0993 220 Coils Coil 95 115 - -
Dere05g0993 220 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Dere05g0993 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 167 - -
Dere05g0993 220 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0993 Dere-ChrDere05 16055810 16056564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0993 13 154 AS2 family AT5G06080 62.676 2.43e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g0993 LOB 6.1e-36 No_clan