Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0987 ATGGAGGGATCTCATCAGTACCAGATGTGGTTGAAGAAGAAGCAGATGTTGAAGTCACATATTGAAGCAGCAAGATCGTGGGAAGAGAGGGCTTTTGCAGAGGACGCAGCTAGGATACTTGGAGGGTACATATGGCCTCCAAGGTCTTACTCTTGCAGTTTCTGCAAAAGAGAGTTCAGGTCAGCCCAAGCTCTTGGGGGTCACATGAATGTCCACAGGAGGGACAGAGCTAGGCTCAAACAAAGCCTAGTTAGCCCTCATCATCACGACAATAATGATTGTAAGGGATCTTCTGATTCAGAGGTAATCATCAATGGAAGGGAAGAAGATTCTAAAGGCTTTAGTGATGGTAATAATAATTATGTTGAAACAGGCTTGTCTGTGGGATTACTACCCACTGAGGAAGCCGTAAGTTGTAAGAGACCAAGGGCTTCCAATATTTCTTCAGTACTGCCTGTCTTCCTCAAGCCATGTTCAAATGATCATAGAGGCCTGGTTTTCCAATCTGCAGAAATGGTACATGGAGTTAAGCCTAAAATGGACGACTTGGATCTTGAACTCAGGCTGGGTAAACCACAGAAAGTTAAATTTAGTCAGGAAGCTCACATGGGCACGATGGTATTTGTAGTACCTGTTAAGCTAGATGAAAGTTTAATCTCTAGCCAGAGCAGTTCAGAGCCTAGAGGCCAGGTTAGAGAACCAGTTGTTGAAAATAGTGAAATGGGCCTAGCAAAGGAGCCCTTGAACAATCAAGCACGAGTGCTTTCTGTGAGGGAGAGGAAGAAGCCAGCATGGCACTCAGTTTTTGTTATGAAGGACGTGAGGTCAAAGGGTAGAAATGAACATGCAGACCGTTACGCTTAG 864 0.4479 MEGSHQYQMWLKKKQMLKSHIEAARSWEERAFAEDAARILGGYIWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQSLVSPHHHDNNDCKGSSDSEVIINGREEDSKGFSDGNNNYVETGLSVGLLPTEEAVSCKRPRASNISSVLPVFLKPCSNDHRGLVFQSAEMVHGVKPKMDDLDLELRLGKPQKVKFSQEAHMGTMVFVVPVKLDESLISSQSSSEPRGQVREPVVENSEMGLAKEPLNNQARVLSVRERKKPAWHSVFVMKDVRSKGRNEHADRYA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0987 287 Gene3D Classic Zinc Finger 47 102 - -
Dere05g0987 287 Pfam C2H2-type zinc finger 50 74 - -
Dere05g0987 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Dere05g0987 287 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Dere05g0987 287 SMART c2h2final6 50 72 IPR013087 -
Dere05g0987 287 PANTHER OS07G0101800 PROTEIN 24 193 - -
Dere05g0987 287 MobiDBLite consensus disorder prediction 219 249 - -
Dere05g0987 287 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0987 Dere-ChrDere05 15967637 15971611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0987 28 195 C2H2 Transcription Factor Family AT5G06070 40.777 8.84e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g0987 zf-C2H2_6 1.4e-06 CL0361