Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0977 ATGAATCCGACAATGCGGTTGCCGTTGGCTCTTCATTACACCTGTCGGCTCAGGAAAAGCAAGAAGAATATCACAATGAAGGCGCTGATTCTGGTTGGAGGTTTTGGAACGAGGCTGAGGCCATTGACACTCAGTGTCCCCAAGCCTCTTGTTGATTTTGCTAACAAACCCATGATCCTGCATCAGATAGAGGCCCTTAAGGCTATTGGAGTTAACGAAGTGGTATTAGCTATCAATTATCAACCAGAGGTTATGTTGAATTTCTTGAAGGAATTCGAGGCAAAACTGGGCATCAAGATAACATGTTCACAAGAAACTGAACCACTCGGGACTGCCGGTCCTCTGGCTCTTGCCAGGGACAAGCTGATAGATGAATCTGGAGAGCCATTCTTTGTTCTCAACAGTGATGTTATTAGTGAGTACCCACTTAAAGAGATGATTGAATTCCATAAATCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAGTATGGTGTGGTTGTCATGGAGGAGACCACAGGGAAGGTCGAGAGATTTGTAGAAAAGCCCAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATCTACTTATTGAACCCCTCAGTTTTGGATCGAATTCAACTAAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGATAGCTGCAGAGAAACAGCTATATGCAATGGTCCTGCCTGGATTTTGGATGGACATAGGACAACCAAGGGACTATATTACTGGCCTGAGACTCTACTTAGATTCACTGAAAAAAAAGTCTTCTTCTAAGTTAGCCAAGGGCGCTCACATTGTGGGGAATGTCATAGTGGACGAGACTGCCAAAATTGGTGAAGGTTGTCTTATCGGACCTGATGTTGCTATTGGTCCTGGCTGCATAATTGAGTCAGGTGTTCGGCTCTCACGTTGCACAGTAATGCGAGGAGTCCGGATTAAGAAACATGCTTGCATATCCAGCAGTATCATTGGGTGGCATTCTACTGTAGGGCAATGGGCTCGTGTGGAGAACATGACTATTCTCGGAGAAGATGTCCATGTGTGTGATGAAATATACAGCAATGGTGGTGTGGTTCTGCCCCACAAGGAGATAAAGTCCAGCATTCTGAAGCCAGAGATAGTCATGTGA 1161 0.4496 MNPTMRLPLALHYTCRLRKSKKNITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGKVERFVEKPKLFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEVFPKIAAEKQLYAMVLPGFWMDIGQPRDYITGLRLYLDSLKKKSSSKLAKGAHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIIESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0977 386 Gene3D Hexapeptide repeat proteins 259 381 - -
Dere05g0977 386 FunFam mannose-1-phosphate guanyltransferase beta 26 257 - -
Dere05g0977 386 Pfam Bacterial transferase hexapeptide (six repeats) 286 320 IPR001451 -
Dere05g0977 386 CDD M1P_guanylylT_B_like_N 26 259 IPR045233 GO:0004475|GO:0005525|GO:0009298
Dere05g0977 386 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 25 258 IPR029044 -
Dere05g0977 386 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 26 385 - -
Dere05g0977 386 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 337 IPR029044 -
Dere05g0977 386 Pfam Nucleotidyl transferase 27 254 IPR005835 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0977 Dere-ChrDere05 15864591 15867789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0977 16 172 Eukaryotic Initiation Factors Gene Family AT4G18300 22.619 2.93e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0977 05 15864591 15867789 Dere05g0977 05 15864591 15867789 CCT
Dere05g0977 05 15864591 15867789 Dere05g0977 05 15864591 15867789 ECH