Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0940 ATGCGCGTGGTTTTCTTGTCCGACTATTGCCATTGGATGCCTATTCACTGCCTTGGGCTCTTGGCATTGGTGAAGCTAGATCCAAGGGGCATAGCTATGTCTTTTATAGGTACCCAACAAAAGTGCAAGGCTTGCGAGAAAACGGTCTATCCCGTTGATCAATTATCCGCTGATGGCGTTGCTTACCATAAGGCCTGCTTCAGGTGCTCTCATTGCAAAGGAACATTAGAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTCTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGCAGTTTCAACAAGAACTTCCAGTCACCTGCAAAGCTAGCTGAGAAGACAACTCCTGAGCTGACAAGGTCCCCAAGTAAAGCTGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAGGGCCAAGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGCTGTCCCATATCGCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAGTCATCTAATCAAGTCTGCATCAATGAAAAGAGCAGCGGCCCCTGTTCCAGAATCTTAA 666 0.461 MRVVFLSDYCHWMPIHCLGLLALVKLDPRGIAMSFIGTQQKCKACEKTVYPVDQLSADGVAYHKACFRCSHCKGTLELSNYSSMEGVLYCKPHYEQLFKETGSFNKNFQSPAKLAEKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYSHLIKSASMKRAAAPVPES 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0940 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 34 67 - -
Dere05g0940 221 CDD LIM2_SF3 140 200 - -
Dere05g0940 221 SMART lim_4 41 93 IPR001781 -
Dere05g0940 221 SMART lim_4 139 191 IPR001781 -
Dere05g0940 221 FunFam LIM domain and actin-binding 1 134 204 - -
Dere05g0940 221 PANTHER OS06G0237300 PROTEIN 37 143 - -
Dere05g0940 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 68 108 - -
Dere05g0940 221 Gene3D Cysteine Rich Protein 36 106 - -
Dere05g0940 221 Gene3D Cysteine Rich Protein 134 204 - -
Dere05g0940 221 FunFam LIM domain and actin-binding 1 36 106 - -
Dere05g0940 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 205 - -
Dere05g0940 221 CDD LIM1_SF3 38 100 - -
Dere05g0940 221 ProSiteProfiles LIM domain profile. 138 198 IPR001781 -
Dere05g0940 221 ProSiteProfiles LIM domain profile. 40 100 IPR001781 -
Dere05g0940 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 165 - -
Dere05g0940 221 Pfam LIM domain 140 195 IPR001781 -
Dere05g0940 221 Pfam LIM domain 42 97 IPR001781 -
Dere05g0940 221 ProSitePatterns LIM zinc-binding domain signature. 42 76 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0940 Dere-ChrDere05 15384121 15386909 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere05g0940 LIM 5.5e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0940 05 15384121 15386909 Dere05g0940 05 15384121 15386909 ECH